Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,196,919 – 2,197,020 |
Length | 101 |
Max. P | 0.797378 |
Location | 2,196,919 – 2,197,020 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.00 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -26.58 |
Energy contribution | -27.13 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -0.97 |
Structure conservation index | 0.93 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2196919 101 + 22224390 GUGGCUCACCCAUUAGAACUCCACCAAAACGCAAGCGCAGGAGUUUUUCCUUCAAGAAGUCAAGGCUUCUUCGUUUUCGGGGUCAUGGUCACAGCGCAUAG------------------- ((((((.((((....(.....).......((.(((((.(((((((((..(((....)))..))))))))).))))).))))))...)))))).........------------------- ( -29.30) >DroSec_CAF1 9880 120 + 1 GUGGCUCACCCAUUAAAACUCCACAAAAACGCAAGCGCAGGAGUUUUUCCUUCAAGAAGUCAAGGCUCCUUCUUUUUCGGGGUCAUGGUCACAGCGUAUAGUAUAUAGGAUAAAGCAACA ((((((.((((...((((............((....))(((((((((..(((....)))..)))))))))..))))...))))...)))))).((...................)).... ( -27.71) >DroEre_CAF1 9879 102 + 1 GUGGCUCACCCAUUAAAACUCCACUAAAACGCAAGCGCAGGAGUU-UUCCUUCAAGAAGUCAAGGCUUCUUCGUUUUCGGGGUCAUGGUCACAGC----AGUG-------UAAA------ ((((((.((((...((((((((.......(....)....))))))-)).....(((((((....)))))))........))))...))))))...----....-------....------ ( -28.80) >consensus GUGGCUCACCCAUUAAAACUCCACAAAAACGCAAGCGCAGGAGUUUUUCCUUCAAGAAGUCAAGGCUUCUUCGUUUUCGGGGUCAUGGUCACAGCG_AUAGU________UAAA______ ((((((.((((...((((((((.......(....)....))))))))......(((((((....)))))))........))))...))))))............................ (-26.58 = -27.13 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:57 2006