Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,195,160 – 2,195,280 |
Length | 120 |
Max. P | 0.520361 |
Location | 2,195,160 – 2,195,280 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -38.43 |
Consensus MFE | -37.67 |
Energy contribution | -36.90 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.14 |
Mean z-score | -1.28 |
Structure conservation index | 0.98 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2195160 120 - 22224390 UAAACUCGAUUCUGUUUACGAGUCGGGACCACGCGUCGUUCAAGUGAUUUGCCCGCUGGCUUCUGUUUCACGGGAAAUAGAAAAGCUCGGGUGAAAGUUCAUCGGGACACUCAAUUUUCG ....((((((((.......)))))))).....(.((.((((..((((((..((((..((((((((((((....))))))))..))))))))..))...))))..)))))).)........ ( -39.70) >DroSec_CAF1 8098 120 - 1 UAAACUCGAUUCUGUUUACAAGUCGGGACCACGCGCCGUUCAAGUGAUUCGCCCGCUGGCUUCUGUUUCAAGGGAAAUGGAAAAGCUCGGGUGAAAGUUCAUCGGGACACUCAAUUUUCG ....(((((((.((....)))))))))..........((((..((((((((((((..((((((((((((....))))))))..))))))))))))...))))..))))............ ( -37.90) >DroEre_CAF1 8259 120 - 1 UAAACUCGACUCUGUUUACAAGUCGGGACCACGCGCCGUAUAAGUGAUUCGCCCGCUGGCUUCUGUUUCACGGGAAAUGGAAAAGCUCGGGUGAAAGUUCAUCGGGACACACCGUUUUUG ....(((((((.((....)))))))))................(((.((((((((..((((((((((((....))))))))..)))))))))))).((((....)))).)))........ ( -37.70) >consensus UAAACUCGAUUCUGUUUACAAGUCGGGACCACGCGCCGUUCAAGUGAUUCGCCCGCUGGCUUCUGUUUCACGGGAAAUGGAAAAGCUCGGGUGAAAGUUCAUCGGGACACUCAAUUUUCG ....(((((((.((....)))))))))..........((((..((((((((((((..((((((((((((....))))))))..))))))))))))...))))..))))............ (-37.67 = -36.90 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:56 2006