Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,193,678 – 2,193,795 |
Length | 117 |
Max. P | 0.917250 |
Location | 2,193,678 – 2,193,795 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.42 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -25.22 |
Energy contribution | -25.33 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.12 |
Structure conservation index | 0.88 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2193678 117 + 22224390 AAUCAAAUGCCCAUUCUAGCGAAUUGAACUUUGCAAUUAAGCCGCAAGUUCCAUCGAACUGGCUCUAAUGCGAAAUUCCUGGAUGGG---GUUACCAAUCAAAUGACAUGGACUUUUUGU ...((((..(((((.((((.(((((.....(((((.(..((((...(((((....)))))))))..).)))))))))))))))))))---....(((.((....))..)))....)))). ( -30.20) >DroSec_CAF1 6599 103 + 1 AAUCAAAUGCCCAUUCUAGCGAAUUGAACUUUGCAAUUAAGCCGCAAGUUCCAUCGAACUGGCUCUAAUGCGAAAUUCCUGGAUGGG---GUUCCCAAUAAAAU--------------GU .........(((((.((((.(((((.....(((((.(..((((...(((((....)))))))))..).)))))))))))))))))))---..............--------------.. ( -27.90) >DroEre_CAF1 6718 106 + 1 AUUCAAAUGCCCAUUCUAGCGAAUUGAACUUUGCAAUUAAGCAGCAAGUUCCAUCGAACUGGCUCUAAUGCGAAAUUCCUGAAUGGGGGAGUUCCUCAUAAAAU--------------GC .........(((((((.((.(((((.....(((((.(((.(.(((.(((((....))))).))))))))))))))))))))))))))((....)).........--------------.. ( -27.70) >consensus AAUCAAAUGCCCAUUCUAGCGAAUUGAACUUUGCAAUUAAGCCGCAAGUUCCAUCGAACUGGCUCUAAUGCGAAAUUCCUGGAUGGG___GUUCCCAAUAAAAU______________GU .........(((((((.((.(((((.....(((((.(..((((...(((((....)))))))))..).)))))))))))))))))))................................. (-25.22 = -25.33 + 0.11)
Location | 2,193,678 – 2,193,795 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.42 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -23.70 |
Energy contribution | -24.03 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.81 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2193678 117 - 22224390 ACAAAAAGUCCAUGUCAUUUGAUUGGUAAC---CCCAUCCAGGAAUUUCGCAUUAGAGCCAGUUCGAUGGAACUUGCGGCUUAAUUGCAAAGUUCAAUUCGCUAGAAUGGGCAUUUGAUU .((((..((((((.((..(((..(((....---.)))..)))((((((.(((...((((((((((....)))))...)))))...))).)))))).........)))))))).))))... ( -32.50) >DroSec_CAF1 6599 103 - 1 AC--------------AUUUUAUUGGGAAC---CCCAUCCAGGAAUUUCGCAUUAGAGCCAGUUCGAUGGAACUUGCGGCUUAAUUGCAAAGUUCAAUUCGCUAGAAUGGGCAUUUGAUU .(--------------((((((.((((...---)))).....((((((.(((...((((((((((....)))))...)))))...))).)))))).......)))))))........... ( -27.60) >DroEre_CAF1 6718 106 - 1 GC--------------AUUUUAUGAGGAACUCCCCCAUUCAGGAAUUUCGCAUUAGAGCCAGUUCGAUGGAACUUGCUGCUUAAUUGCAAAGUUCAAUUCGCUAGAAUGGGCAUUUGAAU ..--------------.((..(((.((....))((((((((((((((..((.....(((.(((((....))))).)))((......))...))..))))).)).))))))))))..)).. ( -27.80) >consensus AC______________AUUUUAUUGGGAAC___CCCAUCCAGGAAUUUCGCAUUAGAGCCAGUUCGAUGGAACUUGCGGCUUAAUUGCAAAGUUCAAUUCGCUAGAAUGGGCAUUUGAUU .................................(((......((((((.(((...((((((((((....)))))...)))))...))).)))))).((((....)))))))......... (-23.70 = -24.03 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:55 2006