Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,709,676 – 19,709,772 |
Length | 96 |
Max. P | 0.577030 |
Location | 19,709,676 – 19,709,772 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 86.70 |
Mean single sequence MFE | -25.19 |
Consensus MFE | -21.68 |
Energy contribution | -21.93 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.86 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19709676 96 + 22224390 CGAAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAGAAACUGAGAAACUGAGGAGCCGA----------------GAAACUGAGAAAGUGCGAGACUGAGCA ......((((((((((((((....(((..((....))..)))...............((.((.......----------------....)).)).)))))))).)))))).. ( -25.10) >DroSec_CAF1 5748 96 + 1 CGAAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAGAAACUGAGAAGCCGAGAAACUGA----------------GAAACUGAGAAAGUGCGAGACUGAGCA ......((((((((((((((....(((..((....))..))).......((.((...(((......)).----------------)...)).)).)))))))).)))))).. ( -24.40) >DroEre_CAF1 3174 96 + 1 CGGAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAAAAGCCGAGAAUCUGAGAAACCGA----------------GAAACUGAGAAAGUGCGAGACUGAGCA ......((((((((((((((....(((..((....))..)))..............(((.((.......----------------....)).))))))))))).)))))).. ( -25.20) >DroYak_CAF1 2926 112 + 1 CGGAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAGAAGCCGAGAAACUGAGAAAUCGAGAAACUGAGAAAACGAGAAACUGAGAAAGUGCGAGACUGAGCA ......((((((((((((((....(((..((....))..)))...............((.((...(((..............)))....)).)).)))))))).)))))).. ( -26.04) >consensus CGAAUUUUUAGUUCGCAUUUAGACGUCGACGGCAACGGAGACUGAGAAACCGAGAAACUGAGAAACCGA________________GAAACUGAGAAAGUGCGAGACUGAGCA ......((((((((((((((....(((..((....))..)))...............((.((...........................)).)).)))))))).)))))).. (-21.68 = -21.93 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:50 2006