Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,707,379 – 19,707,486 |
Length | 107 |
Max. P | 0.998998 |
Location | 19,707,379 – 19,707,486 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 69.84 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -17.10 |
Energy contribution | -15.97 |
Covariance contribution | -1.13 |
Combinations/Pair | 1.48 |
Mean z-score | -2.78 |
Structure conservation index | 0.52 |
SVM decision value | 3.32 |
SVM RNA-class probability | 0.998998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19707379 107 + 22224390 -UUUUUUUGACGAAGGAGGAAGUUUCGUUGGGGUUGCGAAAGCAGUCUGUGGAUGAAAUUAGUUAUUAAAUAGGCGCACAGAUGAGUGCGGAUUGGCGAUGUCCUU-UG -.........(((((((.(.(((((((((.((..(((....)))..))...)))))))))..............(((((......))))).........).)))))-)) ( -32.00) >DroSec_CAF1 3739 101 + 1 ----UUUUGCCGAAG---GAAGUUUCGUUGGGGUUGCGAAAGCAAUCUGGGGCUGAAAUUAGUUAUUAAAUAGGCGCACAGAUGAGUGCGGAUUGGCGAUGUCCUU-UG ----......(((((---((....((((..(((((((....))))))...(((((....)))))..........(((((......)))))..)..))))..)))))-)) ( -34.10) >DroYak_CAF1 872 106 + 1 UUCUUUUUGGCGGAG---GAAGUUUAGUUGGGGUUGCGAAAGCAGUCUGUGGCUGGGAUUAGUUAUUAAAUAGGCGCACAGAUGUGUGCGGAUUGGCGAUGUCCUUUUG ((((((......)))---)))...((((((.((((((....)))).)).))))))((((..((((....((..((((((....))))))..))))))...))))..... ( -30.70) >DroPer_CAF1 4259 89 + 1 --AAAAU---UGGAA---GGGGUCUC----GGGU--CGAACGGGAUUUUGGGUCGAGAUUAGUUAUUAGGCAGGGGGGGGGCUGCCUGCC------CGAUGGCUUGGUG --...((---..(..---..((((((----((.(--((((......))))).)))))))).(((((..((((((.((....)).))))))------..))))))..)). ( -34.70) >consensus ___UUUUUG_CGAAG___GAAGUUUCGUUGGGGUUGCGAAAGCAAUCUGGGGCUGAAAUUAGUUAUUAAAUAGGCGCACAGAUGAGUGCGGAUUGGCGAUGUCCUU_UG ..........((........(((((((...(((((((....))))))).....)))))))..............(((((......)))))......))........... (-17.10 = -15.97 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:47 2006