Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,665,798 – 19,665,937 |
Length | 139 |
Max. P | 0.997519 |
Location | 19,665,798 – 19,665,914 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 92.62 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -19.08 |
Energy contribution | -20.00 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.03 |
Mean z-score | -2.06 |
Structure conservation index | 0.80 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19665798 116 - 22224390 UUUGCGAAUUUUGUUUUUCAGCAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCACACAUUAUUAACAACAUUCGGCUAAGCUAAAUGGCUUUUGAUUCUAUAUA ....(((((.(((((.....((((((((...(((((.(.........).)))))...))))))))..........))))).)))))...(((((....)))))............. ( -22.76) >DroSec_CAF1 39291 115 - 1 -UUGCGAAUUUUGUUUUUCAGCAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCAUACAUUAUUAACAACUUUCGGCUAAGCUAAAUGGCGUUUGAUUCUAUAUA -...((((..(((((.....((((((((...(((((.(.........).)))))...))))))))..........)))))..))))((((.......))))............... ( -21.36) >DroSim_CAF1 31058 115 - 1 -UUGCGAAUUUUGUUUUUCAGCAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCAUACAUUAUGAACAACUUUCGGCUAAGCUAAAUGGCUUUUGAUUCUAUAUA -...((((..((((((....((((((((...(((((.(.........).)))))...)))))))).........))))))..))))...(((((....)))))............. ( -23.42) >DroEre_CAF1 51367 112 - 1 -UUGCGAAUCUUGUUUCUCAACAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGAAAA---UAUUAACAACGUUCGCCGAAGCUUAAUGGCUUUUGAUUCUAUAUA -..((((((.(((((......(((((((...(((((.(.........).)))))...)))))))....---....))))).)))))).((((((....))))))............ ( -25.64) >DroYak_CAF1 53262 112 - 1 -UUGCGAAUUUUGUUUCUCAACAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCAUA---UAUUAACAACGUUCGGCGAAGCUUAAUGGCUUUGGAUUCUAUAUA -...(((((.(((((......(((((((...(((((.(.........).)))))...)))))))....---....))))).))))).(((((((....)))))))........... ( -25.94) >consensus _UUGCGAAUUUUGUUUUUCAGCAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCAUACAUUAUUAACAACGUUCGGCUAAGCUAAAUGGCUUUUGAUUCUAUAUA ....(((((.(((((.....((((((((...(((((.(.........).)))))...))))))))..........))))).)))))...(((((....)))))............. (-19.08 = -20.00 + 0.92)
Location | 19,665,838 – 19,665,937 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 91.73 |
Mean single sequence MFE | -18.58 |
Consensus MFE | -16.34 |
Energy contribution | -16.58 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.21 |
Structure conservation index | 0.88 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19665838 99 - 22224390 UAAUAUAUUUGGCUACAUUUCGUUUUGCGAAUUUUGUUUUUCAGCAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCACACAUUAUUA .........(((..(((.((((.....))))...)))...)))((((((((...(((((.(.........).)))))...))))))))........... ( -19.20) >DroSec_CAF1 39331 98 - 1 UAAUAUACUUGGCAACAUUUCGU-UUGCGAAUUUUGUUUUUCAGCAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCAUACAUUAUUA .........(((.((((.((((.-...))))...))))..)))((((((((...(((((.(.........).)))))...))))))))........... ( -19.40) >DroSim_CAF1 31098 98 - 1 UAAUAUACUUGGCAACAUUUCGU-UUGCGAAUUUUGUUUUUCAGCAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCAUACAUUAUGA ...((((..((((((...((((.-...))))..))))......((((((((...(((((.(.........).)))))...))))))))...)).)))). ( -19.50) >DroEre_CAF1 51407 93 - 1 UAAUA--UUUGGCUACAUUUCGU-UUGCGAAUCUUGUUUCUCAACAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGAAAA---UAUUA (((((--(((((..(((.((((.-...))))...)))..))...(((((((...(((((.(.........).)))))...))))))).)))---))))) ( -18.10) >DroYak_CAF1 53302 93 - 1 UAAUA--UUUGGCUACAUUUCGC-UUGCGAAUUUUGUUUCUCAACAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCAUA---UAUUA (((((--(.(((..(((.((((.-...))))...)))..)....(((((((...(((((.(.........).)))))...))))))))).)---))))) ( -16.70) >consensus UAAUAUAUUUGGCUACAUUUCGU_UUGCGAAUUUUGUUUUUCAGCAUAUAAUUUUUGAAGCGUUCCUAUAGGUUCAAUUUUUAUAUGCAUACAUUAUUA .........(((..(((.(((((...)))))...)))...)))((((((((...(((((.(.........).)))))...))))))))........... (-16.34 = -16.58 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:06 2006