Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,660,529 – 19,660,625 |
Length | 96 |
Max. P | 0.961838 |
Location | 19,660,529 – 19,660,625 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 98.96 |
Mean single sequence MFE | -23.83 |
Consensus MFE | -24.01 |
Energy contribution | -23.83 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -2.99 |
Structure conservation index | 1.01 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19660529 96 + 22224390 UUCAUUGGCAUUAUUCCAGCUUCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU ..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). ( -24.40) >DroSec_CAF1 33754 96 + 1 UUCAUUGGCAUUAUUCUAGCUUCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU ..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). ( -22.10) >DroEre_CAF1 46729 96 + 1 UUCAUUGGCAUUAUUCCAGCUUCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU ..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). ( -24.40) >DroYak_CAF1 47139 96 + 1 UUCAUUGGCAUUAUUCCAGCUCCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU ..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). ( -24.40) >consensus UUCAUUGGCAUUAUUCCAGCUUCGUCGUCGUCAUCAAUUGAAUUCGUUUCAUUUCGAUUCGUUUGAAUGAAUUUCGCUUUGGACUUUUGCUGAUGU ..(((..(((..(.(((((...((...((((..((((.(((((.((........))))))).))))))))....))..))))).)..)))..))). (-24.01 = -23.83 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:59 2006