Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,650,863 – 19,650,965 |
Length | 102 |
Max. P | 0.805475 |
Location | 19,650,863 – 19,650,965 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 85.24 |
Mean single sequence MFE | -37.65 |
Consensus MFE | -26.65 |
Energy contribution | -27.53 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.16 |
Mean z-score | -1.95 |
Structure conservation index | 0.71 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19650863 102 - 22224390 AGAGCUCAUAAGCGCCAACGGCCAAGGCUUUUGGAAAUUAGCGUGGCUGCCAAAUCAGGAACCGGCUUAAGGAGCACCAGGAUUCCGGGA------UUGGGGUGCUAU ..........((((((..((((((..(((..(....)..))).))))))((((.((.((((((.((((...))))....)).)))).)).------)))))))))).. ( -38.90) >DroSec_CAF1 24293 102 - 1 AGAGCUCAUAAGCGCCAUCGGCCAAGGCUUUUGGAAAUUAGCGUGGCUGCCAAAUCAGGAACCGGCUUAAGGAGCACCAGGAUUCCGGGG------UUGGGGUGCUAU ..........((((((..((((((..(((..(....)..))).))))))((((..(.((((((.((((...))))....)).)))).)..------)))))))))).. ( -38.80) >DroSim_CAF1 22667 102 - 1 AGAGCUCAUAAGCGCCAUCGGCCAAGGCUUUUGGAAAUUAGCGUGGCUGCCAAAUCAGGAACCGGCUUAAGGAGCACCAGGAUUCCGGGG------UUGGGGUGCUAU ..........((((((..((((((..(((..(....)..))).))))))((((..(.((((((.((((...))))....)).)))).)..------)))))))))).. ( -38.80) >DroAna_CAF1 43772 106 - 1 AGAGCUCAUAAGCGCCGUUGGCUAAAGCUUUUGGAAAUUAGCGUGGCUUCCAAGCCAGGAUCCGGCUUAAAGGACAC--GGAAGGCAGGGCAACUUCUAGGAGGCUGC ...(((...((...(((..(((....)))..)))...)))))(..((((((..(((....((((.((....))...)--))).)))(((....)))...))))))..) ( -34.10) >consensus AGAGCUCAUAAGCGCCAUCGGCCAAGGCUUUUGGAAAUUAGCGUGGCUGCCAAAUCAGGAACCGGCUUAAGGAGCACCAGGAUUCCGGGG______UUGGGGUGCUAU ..........((((((..((((((..(((..(....)..))).))))))((((.((.((((((.(((.....)))....)).))))..))......)))))))))).. (-26.65 = -27.53 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:56 2006