Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,642,943 – 19,643,053 |
Length | 110 |
Max. P | 0.910547 |
Location | 19,642,943 – 19,643,053 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -30.27 |
Consensus MFE | -21.92 |
Energy contribution | -21.60 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.19 |
Mean z-score | -2.22 |
Structure conservation index | 0.72 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19642943 110 + 22224390 AGUACAUGAAUUUCGACAGCCGUUGUCCUGAGAAAAGGGUUAAAAUAAAAGGGGGUUG------GGCAGCGGC---GGCUGUUGUA-AAAAAGCAAAGAAAAAGUAAAGUAAUUAUUUUG ..........(((((((((((((((((((......)))((...(((........))).------.)).)))))---)))))))).)-))...........(((((((.....))))))). ( -24.30) >DroPse_CAF1 47882 115 + 1 AGUACAUAAAUUUCGACAGCCGUUGUCCCA--AAAAGGGGUAAGCCA---GGGGCCCGGAAGGAGGCAGGGGCCGGGGUUGUUGCGGGAAAACCAAAGAAAAAGUAAAGUAAUUAUUUUG ..(((........((((((((.(.(((((.--......((....)).---..(.(((....)).).).))))).).)))))))).((.....)).........))).............. ( -32.90) >DroPer_CAF1 48848 115 + 1 AGUACAUAAAUUUCGACAGCCGUUGUCCCA--AAAAGGGGUAAGCCA---GGGGCCCGGAAGGAGGCAGGGGCUGGGGUUGUUGCGGGAAAACCAAAGGAAAAGUAAAGUAAUUAUUUUG ..(((........((((((((..(..(((.--....)))..)((((.---..(.(((....)).).)...))))..)))))))).((.....)).........))).............. ( -33.60) >consensus AGUACAUAAAUUUCGACAGCCGUUGUCCCA__AAAAGGGGUAAGCCA___GGGGCCCGGAAGGAGGCAGGGGC_GGGGUUGUUGCGGGAAAACCAAAGAAAAAGUAAAGUAAUUAUUUUG .............((((((((.(.(((((.........((....)).......(((........))).))))).).))))))))................(((((((.....))))))). (-21.92 = -21.60 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:54 2006