Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,611,123 – 19,611,217 |
Length | 94 |
Max. P | 0.814460 |
Location | 19,611,123 – 19,611,217 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 63.47 |
Mean single sequence MFE | -26.63 |
Consensus MFE | -10.62 |
Energy contribution | -11.51 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.09 |
Mean z-score | -2.42 |
Structure conservation index | 0.40 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19611123 94 - 22224390 GUUUUAACGAG--------------------UUUCGCCC---GUGCUCGUUAAGAAA--AACACACUUUGUUGCUUGGCAGGCAAUAAUUCGCUGUUUUUGCCGUUUCC-CUUGUUAAAU ..(((((((((--------------------........---......((((((...--((((.....)))).)))))).(((((.(((.....))).)))))......-))))))))). ( -22.80) >DroSec_CAF1 16921 96 - 1 GUUUUAACGAG--------------------UUUCGCCC---UUGCUCGUUAAGAAAAAAACACACUUUGUUGCUUGGCAGGCAAUAAUUCGCUGUUUUAGCCGUUUCA-CUCGUUAAAU ..(((((((((--------------------(...((..---((((..((((((.....((((.....)))).))))))..))))......((((...)))).))...)-))))))))). ( -24.60) >DroAna_CAF1 18186 113 - 1 C-CUUAACGACCGUUAUACAUUACUUUUGACUUUUGAUUGAGGAGCGAAUUAAGAA---AACACGCUUUGUUGCUCGGCAGGCAACAACUCGCUGUUUUUU-UUUCGCAAAUCCCACU-- (-((((((((..((((...........))))..))).)))))).(((((..(((((---((((((..((((((((.....))))))))..)).))))))))-))))))..........-- ( -32.50) >consensus GUUUUAACGAG____________________UUUCGCCC___GUGCUCGUUAAGAAA__AACACACUUUGUUGCUUGGCAGGCAAUAAUUCGCUGUUUUUGCCGUUUCA_CUCGUUAAAU ..(((((((((..................................))))))))).....(((((...((((((((.....))))))))...).))))....................... (-10.62 = -11.51 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:40 2006