Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,548,133 – 19,548,243 |
Length | 110 |
Max. P | 0.613274 |
Location | 19,548,133 – 19,548,243 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 93.94 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -21.59 |
Energy contribution | -21.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.80 |
Structure conservation index | 0.90 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19548133 110 + 22224390 CAGGCGGGUAUAAUGUCGCGACUUGCAGAUACCCGUUACUCGUUAGUUAAUUUUUCUCUCUUUUAAAGAAAAGAGCGACAUCUGCUGGUAAAUUUCAUUACAUAUCUAAA .....((((((((((.....(((.((((((...((.....))............((.(((((((....))))))).)).)))))).)))......)))))..)))))... ( -22.70) >DroSec_CAF1 11748 110 + 1 CAGACAGGUAUAUUGUAGCGACUUGCAGAUACCCGUUACUCGUUAGUAAAUUCUUCUCUCUUUUAACAAAAAGAGCGACAUCUGCUGGUAAAUUUCAUUACAUAUCUAAA .....((((((..((.....(((.((((((.....(((((....))))).....((.(((((((....))))))).)).)))))).)))......))....))))))... ( -22.70) >DroSim_CAF1 12682 110 + 1 CAGACAGGUAUAUUGUAGCGACUAGCAGAUACCCGUUACUCGUUAGUAAAUUCUUCUCUCUUUUUAAAAAAAGAGCGACAUCUGCUGGUAAAUUUCAUUACAUAUCUAAA .....((((((..((.....((((((((((.....(((((....))))).....((.(((((((....))))))).)).))))))))))......))....))))))... ( -26.70) >consensus CAGACAGGUAUAUUGUAGCGACUUGCAGAUACCCGUUACUCGUUAGUAAAUUCUUCUCUCUUUUAAAAAAAAGAGCGACAUCUGCUGGUAAAUUUCAUUACAUAUCUAAA .....((((((..((.....(((.((((((.....(((((....))))).....((.(((((((....))))))).)).)))))).)))......))....))))))... (-21.59 = -21.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:48 2006