Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,523,196 – 19,523,301 |
Length | 105 |
Max. P | 0.786765 |
Location | 19,523,196 – 19,523,301 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 91.08 |
Mean single sequence MFE | -23.33 |
Consensus MFE | -20.37 |
Energy contribution | -20.93 |
Covariance contribution | 0.57 |
Combinations/Pair | 1.14 |
Mean z-score | -2.13 |
Structure conservation index | 0.87 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19523196 105 - 22224390 UUGUCUAAUUCAAGAUCUUCAAAGGGUGUUUCUACCCUAUACACCUUGUUAUGUUCCGUUAUUACGCGGAGUAAUUAUAAUAAGAGAACUUUAUUUAAAGUUUAA ..((((......))))......((((((....))))))......(((((((((((((((......))))))....))))))))).(((((((....))))))).. ( -24.00) >DroSec_CAF1 7824 104 - 1 UUGUCUAAUUCAAGAUCUUCAUAGGGUGUU-CUACCUUAUACGUUUUGUUAUGUUCCGUUAUUACGCGGCGUAGUUAUAAUUAGAGAACUUAACUUAGAGUUUAA ...(((((((((((((....((((((((..-.))))))))..))))))((((((..(((....)))..))))))....)))))))((((((......)))))).. ( -23.00) >DroSim_CAF1 6100 104 - 1 UUGUCUAAUUCAAGAUCUUCAUAGGGUGUU-UUACCUUAUACGUUUUGUUAUGUUCCGUUAUUACGCGGCGUAGUUAUAAUUAGAUAACUUUAUUUAGAGUUUAA .(((((((((((((((....((((((((..-.))))))))..))))))((((((..(((....)))..))))))....)))))))))(((((....))))).... ( -23.00) >consensus UUGUCUAAUUCAAGAUCUUCAUAGGGUGUU_CUACCUUAUACGUUUUGUUAUGUUCCGUUAUUACGCGGCGUAGUUAUAAUUAGAGAACUUUAUUUAGAGUUUAA ...(((((((((((((....((((((((....))))))))..))))))((((((..(((....)))..))))))....)))))))((((((......)))))).. (-20.37 = -20.93 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:39 2006