Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,521,809 – 19,521,929 |
Length | 120 |
Max. P | 0.742741 |
Location | 19,521,809 – 19,521,929 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.83 |
Mean single sequence MFE | -39.42 |
Consensus MFE | -33.54 |
Energy contribution | -34.54 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.13 |
Mean z-score | -1.54 |
Structure conservation index | 0.85 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19521809 120 - 22224390 CACGUAUCGCACCUUCCAGUUUGGCAUCAUCAUCUUCGGCUUGAGCUCCUGUGCGGGCCUAAGUGUCUGCACCAAUGUGACUUUCUACAUGGACUGGAUCUGGGAUGCUCUGGUUAACUU ...(((((.((...((((((...(((....((.(((.((((((.((....)).)))))).)))))..))).(((.((((......)))))))))))))..)).)))))............ ( -36.60) >DroSec_CAF1 6446 120 - 1 CAGGUAUCGCACCUUCCAGUUCGGCAUCAUCAGCUUCGGCUUGAGUUCCUGUGCGGGCCUAAGUGUCUGCACCAAUGUGACUCACUACGUGGACUGGAUCUGGGAUGCUCUGGUCAUCUC ((((((((.((...(((((((((.(......(((....)))(((((..(.((((((((......))))))))....)..)))))....))))))))))..)).))))).)))........ ( -47.70) >DroSim_CAF1 4732 120 - 1 CAGGUAUCGCACCUUCCAGUUCGGCAUCAUCAGCUUCGGCUUGAGUUCCUGUGCGGGCCUAAGUGUCUGCACCAAUGUGACUCACUACGUGGACUGGAUCUGGGAUGCUCUGGUCAUCUC ((((((((.((...(((((((((.(......(((....)))(((((..(.((((((((......))))))))....)..)))))....))))))))))..)).))))).)))........ ( -47.70) >DroEre_CAF1 5958 120 - 1 CAGGUAUCGCACCAUCCAGUUCGGCAUCAUCAGCUUCGGCUUAAGUUCCUGCGCAGGCUUAACUGUCUGCACCAAUGUGGCUCAGUACAUGGACUGGAUCUGGGAUGUUCUGAAUAGCUC ((((...((..(((((((((((((.......(((....)))...........((((((......)))))).)).(((((......)))))))))))))..)))..)).))))........ ( -38.10) >DroYak_CAF1 6110 120 - 1 CAGGUAUCGCACCUUCCAGCUCGGCUUUAUCAUCUACGGCCUGAAUUCCUGUGCAGGCUUAAAUGUCUACACCAAUGUGACUUACUACAUGGACUGGAUCUUGAAUGUUCUGGAUAACUG ((((.....((...(((((...((((.((.....)).)))).....(((.(((.((((......)))).)))..(((((......)))))))))))))...)).....))))........ ( -27.00) >consensus CAGGUAUCGCACCUUCCAGUUCGGCAUCAUCAGCUUCGGCUUGAGUUCCUGUGCGGGCCUAAGUGUCUGCACCAAUGUGACUCACUACAUGGACUGGAUCUGGGAUGCUCUGGUUAACUC ((((((((.((...((((((((((..(((..(((....))))))...)).((((((((......))))))))..(((((......)))))))))))))..)).))))).)))........ (-33.54 = -34.54 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:38 2006