Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,486,056 – 19,486,172 |
Length | 116 |
Max. P | 0.796891 |
Location | 19,486,056 – 19,486,172 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.34 |
Mean single sequence MFE | -26.16 |
Consensus MFE | -12.68 |
Energy contribution | -13.80 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.29 |
Mean z-score | -2.16 |
Structure conservation index | 0.48 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19486056 116 + 22224390 AUUGGCUUGCCUCUCAGUUACAAACUUGUUUAAGCAUGUAUAUAGAAAAAAUUGAAAAUGUACAGAAAUAUAU---GGUAAC-UAGUAACUCAAGUCCUUGCCAUCGCUAAAUUUGCGAA ...((((((...((.((((((.....(((((.....(((((((..............))))))).)))))...---.)))))-))).....)))))).......((((.......)))). ( -22.44) >DroSec_CAF1 8038 116 + 1 AGUGGCUUGGAUCCCAGUUACAAACUUGUUUAAGCAUGUAUAUCUAAAAAAUUGAAAAUGCACUGAAAUAUAU---GGUAAC-UAGUAACUCAAGUCCUUGCCAUCGCUACAUUUGCGAA ..((((..((((...((((((...(((....)))(((((((.((....................)).))))))---).....-..))))))...))))..))))((((.......)))). ( -27.55) >DroSim_CAF1 8972 116 + 1 AGUGGCUUGGGUCCCAGUUACAAACUUGCUUAAGCAUGUAUGCAUAAAAAAUUGAAAAUGCACUGAAAUAUAU---GGUAAC-UAGUAACUCAAGCCCUUGCCAUCGCUACAUUUGCGAA ((.(((((((((..(((((((..((.(((....))).)).(((((............)))))...........---.)))))-).)..))))))))))).....((((.......)))). ( -33.40) >DroEre_CAF1 7697 113 + 1 AUUGGCUUGCAUCUCAGUUACAAACUUGUUUAACCAAGUUUGUGGAAAAAAAU-------UAAAGAAAUAUAAACUUAAAACUUAAAGACUUAAGUCUUUGCCAUCUCUAGAUUUGCGAA ......(((((..((..(((((((((((......)))))))))))........-------.......................(((((((....))))))).........))..))))). ( -23.70) >DroYak_CAF1 7259 115 + 1 AUUGGCUGGGUUCUCAGUUACAAACAUGUUUAACGAA-UUCGUAGAAAAUAUUUGAAAUUUACUGAAAUAUGA---UAUAAC-UAAAGACUCGAGUCUUUGCCAUCGCUAAAUUUGCGAA ..((((.......(((((..((((.((.(((.(((..-..))).))).)).))))......))))).......---......-.((((((....))))))))))((((.......)))). ( -23.70) >consensus AUUGGCUUGGAUCUCAGUUACAAACUUGUUUAAGCAUGUAUGUAGAAAAAAUUGAAAAUGUACUGAAAUAUAU___GGUAAC_UAGUAACUCAAGUCCUUGCCAUCGCUAAAUUUGCGAA ..((((..((((...((((((..((.(((....))).))(((((........................)))))............))))))...))))..))))((((.......)))). (-12.68 = -13.80 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:28 2006