Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,481,338 – 19,481,458 |
Length | 120 |
Max. P | 0.863200 |
Location | 19,481,338 – 19,481,458 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.32 |
Mean single sequence MFE | -54.62 |
Consensus MFE | -48.68 |
Energy contribution | -49.44 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.03 |
Mean z-score | -1.39 |
Structure conservation index | 0.89 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19481338 120 + 22224390 AGUUUGGCAGCUGAGGUGGCCGUGGUCUCGACAUGCUCCUGAUCCCGGUCCUCGACCAGGACAGAGGUGGUGUCACUGGUGGCGCCGCCUCCGCUGCGACGCCUCCUCCUGCUUCUCCUA .....(((((..((((.(((.((.((..((.........((.(((.((((...)))).)))))((((((((((((....))))))))))))))..)).))))).)))))))))....... ( -53.70) >DroSec_CAF1 3321 120 + 1 AGUUUGGCAGCUGAGGUGGCCGUGGUCUCGACGUGCUCCUGAUCCCGGUCCUCGACCAGGACCGAGGUGGUGUCACUGGUGGCGCCGCCUCCGCUGCGACGCCUCCUCCUGCUUCUCGUA .(...(((((..((((.(((.((.((..((................((((((.....))))))((((((((((((....))))))))))))))..)).))))).)))))))))...)... ( -56.00) >DroSim_CAF1 3385 120 + 1 AGUUUGGCAGCUGAGGUGGCCGUGGUCUCGACGUGCUCCUGAUCCCGGUCCUCGACCAGGACCGAGGUGGUGUCACUGGUGGCGCCGCCUCCGCUGCGACGCCUCCUCCUGCUUCUCGUA .(...(((((..((((.(((.((.((..((................((((((.....))))))((((((((((((....))))))))))))))..)).))))).)))))))))...)... ( -56.00) >DroEre_CAF1 3010 118 + 1 AGUUUGGCAGCUGAGGUGGCCGUGGUCUCGACGUGCUCCUGACCCUGGUCCUCGACCAGGAUCGAGGUGGGGUCGCUGAUGGCGCCGCCCCCGCUGCGACGCCUCCUCCUGCUUCUCU-- ......(((((.(.((((((.((.(((.((((.(.(.(((((.(((((((...))))))).)).))).).)))))..))).)))))))).).)))))((.((........)).))...-- ( -52.40) >DroYak_CAF1 2565 118 + 1 AGUUUGGCAGCUGAGGUGGCCGUGGUCUCGACGUGCUCCUGAUCCUGGUCCUCGACCAGGAACGAGGUGUGGUCGCUGGUGGCGCCGCCUCCGCUGCGACGCCUCCUCCUGCUUCUCG-- ......(((((.((((((((.((..((.((((.(((.((((.((((((((...)))))))).).))).)))))))..))..)))))))))).)))))((.((........)).))...-- ( -55.00) >consensus AGUUUGGCAGCUGAGGUGGCCGUGGUCUCGACGUGCUCCUGAUCCCGGUCCUCGACCAGGACCGAGGUGGUGUCACUGGUGGCGCCGCCUCCGCUGCGACGCCUCCUCCUGCUUCUCGUA .(...(((((..((((.(((.((.((..((............(((.((((...)))).)))..((((((((((((....))))))))))))))..)).))))).)))))))))...)... (-48.68 = -49.44 + 0.76)
Location | 19,481,338 – 19,481,458 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.32 |
Mean single sequence MFE | -50.68 |
Consensus MFE | -48.76 |
Energy contribution | -48.40 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -1.17 |
Structure conservation index | 0.96 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796962 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19481338 120 - 22224390 UAGGAGAAGCAGGAGGAGGCGUCGCAGCGGAGGCGGCGCCACCAGUGACACCACCUCUGUCCUGGUCGAGGACCGGGAUCAGGAGCAUGUCGAGACCACGGCCACCUCAGCUGCCAAACU ..((...(((..((((.((((((((.......)))))))).....(((((...(..(((((((((((...)))))))).)))..)..)))))............)))).))).))..... ( -50.10) >DroSec_CAF1 3321 120 - 1 UACGAGAAGCAGGAGGAGGCGUCGCAGCGGAGGCGGCGCCACCAGUGACACCACCUCGGUCCUGGUCGAGGACCGGGAUCAGGAGCACGUCGAGACCACGGCCACCUCAGCUGCCAAACU ........((((((((.((((((((.......))))))))....(((......(((.((((((((((...)))))))))))))..)))((((......))))..))))..))))...... ( -50.70) >DroSim_CAF1 3385 120 - 1 UACGAGAAGCAGGAGGAGGCGUCGCAGCGGAGGCGGCGCCACCAGUGACACCACCUCGGUCCUGGUCGAGGACCGGGAUCAGGAGCACGUCGAGACCACGGCCACCUCAGCUGCCAAACU ........((((((((.((((((((.......))))))))....(((......(((.((((((((((...)))))))))))))..)))((((......))))..))))..))))...... ( -50.70) >DroEre_CAF1 3010 118 - 1 --AGAGAAGCAGGAGGAGGCGUCGCAGCGGGGGCGGCGCCAUCAGCGACCCCACCUCGAUCCUGGUCGAGGACCAGGGUCAGGAGCACGUCGAGACCACGGCCACCUCAGCUGCCAAACU --......((((((((.((((((.(.(((((((...(((.....))).)))).(((.((((((((((...)))))))))))))....))).).)))....))).))))..))))...... ( -53.50) >DroYak_CAF1 2565 118 - 1 --CGAGAAGCAGGAGGAGGCGUCGCAGCGGAGGCGGCGCCACCAGCGACCACACCUCGUUCCUGGUCGAGGACCAGGAUCAGGAGCACGUCGAGACCACGGCCACCUCAGCUGCCAAACU --......((((((((.((((((.(.(((((((.(((((.....))).))...))))((((((((((.........)))))))))).))).).)))....))).))))..))))...... ( -48.40) >consensus UACGAGAAGCAGGAGGAGGCGUCGCAGCGGAGGCGGCGCCACCAGUGACACCACCUCGGUCCUGGUCGAGGACCGGGAUCAGGAGCACGUCGAGACCACGGCCACCUCAGCUGCCAAACU ........((((((((.((((((((.......)))))))).....((((..(.(((.((((((((((...))))))))))))).)...))))............))))..))))...... (-48.76 = -48.40 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:48:11 2006