Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,426,567 – 19,426,681 |
Length | 114 |
Max. P | 0.606706 |
Location | 19,426,567 – 19,426,681 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.60 |
Mean single sequence MFE | -32.91 |
Consensus MFE | -20.11 |
Energy contribution | -21.07 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.17 |
Mean z-score | -1.99 |
Structure conservation index | 0.61 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19426567 114 + 22224390 CUACCAACCCAUCAAGAUGGUCAAGCAUAGCACAGGGCCAAUCGUUUCGCUC------CUGGUCAUGUCCUUGGCACUGACCAGUGCCAGUAUACGUGUGGAGCAUCCAAAGAACUCCAC ........((((....))))....((((..(.((((((.((....)).)).)------))))..))))..((((((((....)))))))).......((((((..((....)).)))))) ( -33.40) >DroSec_CAF1 24885 108 + 1 CUACCAACCCAUCAACAUGGUCG------CCACAGGGCCAAUCCUUUCGCUC------CUGGUCUUGUCCUUGGCACUGACCAGUGCCAGUCUACGUGUGGAGCUUCCAAAGAACUCCUC ..............(((((....------..(((((((((............------.)))))))))..((((((((....))))))))....)))))((((.(((....))))))).. ( -32.52) >DroSim_CAF1 20972 108 + 1 CUACCAACCCAUCAACAUGGUCG------CCACAGGGCCAAUCAUUUCGCUC------CUGGUCUUGUCCCUGGCACUGACCAGUGCCAGUCUACGUGUGGAGCUUCCAAAGAACUCCUC ..............(((((....------..(((((((((............------.)))))))))..((((((((....))))))))....)))))((((.(((....))))))).. ( -34.72) >DroEre_CAF1 19624 105 + 1 CUUCCAACCCAGCAACAUGGUCA------CCAUAAGGCGAACCAUUUCGCUC------CUGGUCUUGUCCUUGGCACUGACCAGCGCCAGUACACGUGUGGAGCUUCCAAAAGAC---GC ...........((...((((((.------((....)).).)))))...((((------((((((.(((.....)))..)))))((((........)))))))))...........---)) ( -28.30) >DroYak_CAF1 25758 114 + 1 CUACCAACCCAUCAACAUGGUCA------CCAUUGGGCCAACCAUUUCGCUCUUGCUUCUGCUCCUGUCCUUGGCACUGGCCAGCGCCAGUGUGGGUGUGGAGCUUCCAAAUGACUUCUC ..................(((((------...(((((...........((....))....(((((...(((..((((((((....)))))))))))...))))).))))).))))).... ( -35.60) >consensus CUACCAACCCAUCAACAUGGUCA______CCACAGGGCCAAUCAUUUCGCUC______CUGGUCUUGUCCUUGGCACUGACCAGUGCCAGUAUACGUGUGGAGCUUCCAAAGAACUCCUC ..............(((((............(((((((((...................)))))))))..((((((((....))))))))....)))))((.....))............ (-20.11 = -21.07 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:44 2006