Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,423,434 – 19,423,554 |
Length | 120 |
Max. P | 0.904280 |
Location | 19,423,434 – 19,423,554 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.31 |
Mean single sequence MFE | -41.80 |
Consensus MFE | -31.71 |
Energy contribution | -33.90 |
Covariance contribution | 2.19 |
Combinations/Pair | 1.09 |
Mean z-score | -2.40 |
Structure conservation index | 0.76 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.904280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19423434 120 - 22224390 GACGAGUGCAUUGCAAUUGACCAUGCUGUGACCAGCAGUCACAGUAUCAAGGGCAAGUACUGCAUCACCAAACUGACACCAGCUCCAAGUCUGCUGCCCAUAUUAGCUCUCAAGUCAGCU ((.((((((.((((..((((...(((((((((.....)))))))))))))..))))))))).).))......(((((...(((.........)))((........))......))))).. ( -36.10) >DroSec_CAF1 21510 120 - 1 GACGAGUGCAUUGCAAUAGACCAUGCUGUGACCAGCAGUCACAGCAUCAAGGGCAAGUACUGCAUCUCCAAGGUGGCACCAGCUCCAACUGCGCUGCCCAUAUUAGCGCUCAAGUCAGCU (((((((((.............((((((((((.....))))))))))...(((((.((..((((((.....))).)))...((.......)))))))))......))))))..))).... ( -42.60) >DroSim_CAF1 17376 120 - 1 GACGAGUGCAUUGCAAUAGACCACGCUGUGACCAGCAGUCACAGCAUCAAGGGCAAGUACUGCAUUUCCAAGGUUGCACCAGCUCCAACUGCGCUGCCCAUAUUAGCGAUCAAGUCAGCU (((...((.(((((((((......((((((((.....)))))))).....(((((.((..((((...(....).))))...((.......))))))))).)))).))))))).))).... ( -39.60) >DroYak_CAF1 23015 120 - 1 GACGAGUGCAUUGCGGUGGACCACGCGGUGACCAGCAGUCACAGCAUCAAGGGCAAGUACUGCAUCAGCAAGCUGGCACCAGCUCCAAGUGCGGUGCCCGCAUUUGUCCUCAAGUCAGCU (((((((((..(((.(((.....))).(((((.....))))).)))....(((((.(((((((....)).(((((....)))))...)))))..))))))))))))))............ ( -48.90) >consensus GACGAGUGCAUUGCAAUAGACCACGCUGUGACCAGCAGUCACAGCAUCAAGGGCAAGUACUGCAUCACCAAGCUGGCACCAGCUCCAACUGCGCUGCCCAUAUUAGCGCUCAAGUCAGCU (((((((((...............((((((((.....)))))))).....(((((.(((((.........(((((....)))))...)))))..)))))......))))))..))).... (-31.71 = -33.90 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:43 2006