Locus 7785

Sequence ID X_DroMel_CAF1
Location 19,385,469 – 19,385,573
Length 104
Max. P 0.993590
window12774

overview

Window 4

Location 19,385,469 – 19,385,573
Length 104
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 72.65
Mean single sequence MFE -26.20
Consensus MFE -19.53
Energy contribution -18.12
Covariance contribution -1.41
Combinations/Pair 1.33
Mean z-score -2.66
Structure conservation index 0.75
SVM decision value 2.41
SVM RNA-class probability 0.993590
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19385469 104 + 22224390
CGUCGACUUUUCGUGGUUGGUGGUUGAACUUCGAUUUUAA---GUAUUUAAAU--AAAA-----UGAAAUCUGUUCAUUCUCCGACACAAGAAGUUCACGCAAAGGAGCUGCAG-
.((.(((((((.(((.((((.(..(((((...(((((((.---.(((....))--)...-----))))))).)))))..).))))))).))))))).))(((.......)))..- ( -28.50)
>DroVir_CAF1 29490 93 + 1
CAUUCACUUUUCGUGUUCGAUGUUUGAACUUGGAUUUUUU---UUAUAU-------ACA-----C-AAAUCUGUUCAUUCCUCGACACUAGAAGUUUGCGUCAAUAAGC------
.....((((((.((((.(((.(..(((((..((((((...---......-------...-----.-)))))))))))..).))))))).))))))..............------ ( -19.72)
>DroSec_CAF1 18720 98 + 1
CGUAUACUUUUCGGGGUUGGUGGUUGAACUUCGAUUUUAG---GUAUUUAAAU--AAGA-----U-AAAUCUGUUCAUUCUUCGACCCAAAAAGUUCACGUGAAGAAGC------
(((..((((((..(((((((.(..(((((...(((((...---.(((....))--)...-----.-))))).)))))..).))))))).))))))..))).........------ ( -25.80)
>DroEre_CAF1 17934 98 + 1
CGUCGACUUUUCGUGGUUGGUGGCUGAACUUAGAUUUUGA---GUAUUCAAAU--AAAA-----U-AAAUCUGUUCAUUCCUCGACACAAGAAGUUGACGUGCAGGAGC------
(((((((((((.(((.((((.(..(((((..((((((...---.(((....))--)...-----.-)))))))))))..).))))))).))))))))))).........------ ( -28.90)
>DroWil_CAF1 22253 113 + 1
CAUGGCCUUUUCGUGUUUGGUGAUUGAACUUGGAUUUUGUUCUAUAUACAUAUAUAAAAAUAUGU-AAAUCUGUUCAUUCCUCGACACUAGAAGUUCAUGUCAAUAA-CUUCAUU
((((..(((((.(((((.((.((.(((((.((((......))))..(((((((......))))))-).....))))).)))).))))).)))))..)))).......-....... ( -30.60)
>DroMoj_CAF1 24269 95 + 1
CUUUCACUUUUCGUGUUCGAUGUUUGAACUUGGAUUUUUA---AAAUAUG-----AAAA-----G-AAAUCUGUUCAUUCCUCGACACUAAGAGUUUAGGUCUAUAAAC------
(((..((((((.((((.(((.(..(((((..((((((((.---.......-----...)-----)-)))))))))))..).))))))).))))))..))).........------ ( -23.70)
>consensus
CGUCGACUUUUCGUGGUUGGUGGUUGAACUUGGAUUUUAA___GUAUAUAAAU__AAAA_____U_AAAUCUGUUCAUUCCUCGACACAAGAAGUUCACGUCAAGAAGC______
(((..((((((.(((.((((.(..(((((...(((((.............................))))).)))))..).))))))).))))))..)))............... (-19.53 = -18.12 +  -1.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:30 2006