Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,335,820 – 19,335,924 |
Length | 104 |
Max. P | 0.738286 |
Location | 19,335,820 – 19,335,924 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 72.39 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -11.90 |
Energy contribution | -11.47 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.30 |
Mean z-score | -1.78 |
Structure conservation index | 0.55 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19335820 104 - 22224390 UGUAUAUGUACAUAGUAGUUCCUUGUUGAGGAACAGAGGAUGUAAAAUUCGUAAUUUGUUCAUGUUUUUCGACUAUCAAAUAGAUAUAAGUCUGAGUAUAUCAA .....(((((((((((.(((((((...)))))))((((.(((..((((.....))))...))).))))...)))))....(((((....))))).))))))... ( -19.40) >DroSec_CAF1 9160 89 - 1 ---------------UAGUUCCUUGUUGAGGAACGGGGGAUGUAAAAUUCGUCAUUUGUUCAUGUUCUAUAUCUAUCAAAUAGAUAUAAGUCUGAGAACAUCAA ---------------..(((((((...)))))))((.((((.....)))).))...(((((.....((((((((((...)))))))).)).....))))).... ( -22.00) >DroYak_CAF1 8820 89 - 1 ---------------UAGUUCCCUGUUUGGGAACGGGGAAUCUAAGAUUCGUCAUUAGUUCAUAUUUUAUGACUGUAGAAUAGAUAAAAUGCUAAGAACGUCAA ---------------((((((((((((....))))))))).))).((..(((..(((((((.((((((((....))))))))))......)))))..))))).. ( -23.10) >consensus _______________UAGUUCCUUGUUGAGGAACGGGGGAUGUAAAAUUCGUCAUUUGUUCAUGUUUUAUGACUAUCAAAUAGAUAUAAGUCUGAGAACAUCAA .................((((((.....))))))((.((((.....)))).))....((((.((.....)).........(((((....))))).))))..... (-11.90 = -11.47 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:13 2006