Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,335,361 – 19,335,468 |
Length | 107 |
Max. P | 0.539788 |
Location | 19,335,361 – 19,335,468 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.32 |
Mean single sequence MFE | -38.30 |
Consensus MFE | -15.72 |
Energy contribution | -16.24 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.20 |
Mean z-score | -2.22 |
Structure conservation index | 0.41 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19335361 107 + 22224390 CCAUUAUCAGUCUUAUCAGGCCCUGUCCGGCC----GGACUUUCAUGCCGCUGA-------AAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG--UUCCGAUAGGGACCACCGAC .((((.(((((.......((((......))))----((.(......))))))))-------.))))........(((....))).......(((((((--((((....))))))))))). ( -39.70) >DroSec_CAF1 8776 102 + 1 CCAUUAUCAGUGUUAUCAGGCCCUGUCCGGCC----GGACUUUCAUGCCGCUGA-------CAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG--UUCCGAUAGGG-----CGAC .........((.(((((.((((......))))----(((.......((((((((-------.((((.((((..........)))).)))).)))))))--))))))))).)-----)... ( -30.91) >DroEre_CAF1 8436 102 + 1 CCAUUAUCAGCCUUAUCAGGCCCUGUCCGGCC----GGACUUUCAUGUCGCUGA-------AAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG--UUCCGAUAGGG-----CGAC .........((((((((.((((......))))----((((......)(((((((-------(((((.((((..........)))).))))))))))))--.))))))))))-----)... ( -35.20) >DroYak_CAF1 8428 102 + 1 CCAUUAUCAGUCUUAUCAGGCCCUGUCCGGCC----GGACUUUCAUGCCGCUGA-------CAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG--UUCCGAUAGGG-----CGAC .........((((((((.((((......))))----(((.......((((((((-------.((((.((((..........)))).)))).)))))))--)))))))))))-----)... ( -34.11) >DroAna_CAF1 11696 110 + 1 CGGCCG--UGUCUUAUCAGGGCCUGCCCGGCCACCCGACCAUUCCUGUCGACGGCGACGAUAAUUGCGGUUGUUGCUGUUG-GCGUUAUUUUCGGUGGCUUUCGGCUCGGG-----CU-- .((((.--((......)).)))).(((((((((((.((..((..(.(((((((((((((((.......)))))))))))))-)))..))..))))))))........))))-----).-- ( -51.60) >consensus CCAUUAUCAGUCUUAUCAGGCCCUGUCCGGCC____GGACUUUCAUGCCGCUGA_______AAAUGUUGUUAUUGCUGUUGAGCGUUAUUUUCGGUGG__UUCCGAUAGGG_____CGAC ..........(((((((.((((......))))...............(((((((........((((....))))(((....))).......)))))))......)))))))......... (-15.72 = -16.24 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:47:12 2006