Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,296,983 – 19,297,077 |
Length | 94 |
Max. P | 0.630730 |
Location | 19,296,983 – 19,297,077 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -22.19 |
Energy contribution | -22.87 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.12 |
Mean z-score | -2.29 |
Structure conservation index | 0.69 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19296983 94 + 22224390 AAAGGACUAAACAGCAGAUUAAGGGGACGGUUACGGGGACAAGGACGAAUCUGAAUCCUUGUUUCUGCCUUUGUCGUCCCGCU--GUCAAUCUUUU ((((((....(((((........(((((((...(((..(((((((..........)))))))..)))......))))))))))--))...)))))) ( -31.50) >DroSec_CAF1 75534 93 + 1 -AAGGACUAAGCAGCAAUUUAAGGGGACGGGCAUGGGGACAAGGACGAAUCCGAAUCCUUGUUUCUGCCUUUGUCGUCCCGCU--GUCAAUCUUUU -(((((....(((((........((((((((((..(..(((((((((....))..)))))))..))))).....)))))))))--))...))))). ( -33.50) >DroYak_CAF1 76685 95 + 1 -AAGGACUAAACAGCAGAUUAAGGGGACGAGGACGAGGACGAAUCCGCAUCGGAAUCCUUGUUUCUGCCUUUGUCGUCCCGCUGUGUCAAUCUCUU -...(((...(((((.(((..(((((.((..((((((((....((((...)))).))))))))..)))))))...)))..))))))))........ ( -31.30) >consensus _AAGGACUAAACAGCAGAUUAAGGGGACGGGCACGGGGACAAGGACGAAUCCGAAUCCUUGUUUCUGCCUUUGUCGUCCCGCU__GUCAAUCUUUU ....(((.....(((........(((((((...((((((((((((..........))))))))))))......))))))))))..)))........ (-22.19 = -22.87 + 0.67)
Location | 19,296,983 – 19,297,077 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -19.64 |
Energy contribution | -20.20 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -2.61 |
Structure conservation index | 0.64 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19296983 94 - 22224390 AAAAGAUUGAC--AGCGGGACGACAAAGGCAGAAACAAGGAUUCAGAUUCGUCCUUGUCCCCGUAACCGUCCCCUUAAUCUGCUGUUUAGUCCUUU ....(((((((--(((((((((.....((.....((((((((........))))))))..)).....))))))........)))).)))))).... ( -29.00) >DroSec_CAF1 75534 93 - 1 AAAAGAUUGAC--AGCGGGACGACAAAGGCAGAAACAAGGAUUCGGAUUCGUCCUUGUCCCCAUGCCCGUCCCCUUAAAUUGCUGCUUAGUCCUU- ....(((((((--(((((((((.....((((...((((((((........)))))))).....))))))))))........)))).))))))...- ( -32.70) >DroYak_CAF1 76685 95 - 1 AAGAGAUUGACACAGCGGGACGACAAAGGCAGAAACAAGGAUUCCGAUGCGGAUUCGUCCUCGUCCUCGUCCCCUUAAUCUGCUGUUUAGUCCUU- (((.((((((.((((((((((((....((.....((.(((((((((...))))...))))).)))))))))))........))))))))))))))- ( -30.10) >consensus AAAAGAUUGAC__AGCGGGACGACAAAGGCAGAAACAAGGAUUCAGAUUCGUCCUUGUCCCCGUACCCGUCCCCUUAAUCUGCUGUUUAGUCCUU_ ....((((((...(((((((((.....((.....((((((((........))))))))..)).....))))))........)))..)))))).... (-19.64 = -20.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:52 2006