Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,243,853 – 19,243,973 |
Length | 120 |
Max. P | 0.610403 |
Location | 19,243,853 – 19,243,973 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.21 |
Mean single sequence MFE | -20.58 |
Consensus MFE | -17.14 |
Energy contribution | -17.88 |
Covariance contribution | 0.74 |
Combinations/Pair | 1.04 |
Mean z-score | -1.44 |
Structure conservation index | 0.83 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19243853 120 + 22224390 GCAACAUAUUAAAGCGUUAAAGAUAUUAUAUUAUUCACGAAAACAAUGCACUCUUUCACCGCGUGAUUUAUCGAUUUUGACAAUGUUCAUUUUGCCUGAAAAGGCAUAACGCUUAAAUUA ...........(((((((((((((...(((((..(((((((((..((((...........))))..))).)))....))).)))))..)))))((((....)))).))))))))...... ( -23.30) >DroSec_CAF1 30770 101 + 1 GCAUCACAUUAAAGCGUUAAAGAUAU-----UAUUCACGAAAACAAUGCACUCUUUCACCGCGUGAUUUAUCGAUUU--------------AUGCCUCGAAAAGCAUAACGCUUCAAUUA .......(((.((((((((..((((.-----...(((((.....((........)).....)))))..)))).....--------------.(((........))))))))))).))).. ( -17.80) >DroSim_CAF1 27349 115 + 1 GCAUCACAUUAAAGCGUUAAAGAUAU-----UAUUCACGAAAACAAUGCACUCUUUCACCGCGUGAUUUAUCGAUUUUGACAAUGUUCAUUUUGCCUCGAAAGGCAUAACGCUUAAAUUA ...........((((((((..((((.-----...(((((.....((........)).....)))))..))))....................(((((....)))))))))))))...... ( -22.60) >DroEre_CAF1 28418 115 + 1 GCAUCACAUUAAAGUGUUAAAGAUAU-----UAUUCACGAAAACAAUGUACUUUUUCAUCGCGUGAUUUAUCGAUUUUGACAAUGUUAAUUUUGCCUCAAAAGGCAUAACGCUUAAAUUA ...........((((((((..((((.-----...(((((......(((........)))..)))))..))))....................(((((....)))))))))))))...... ( -21.60) >DroYak_CAF1 29961 114 + 1 GCA-CACAUUAAAGCACUAAAGAUAU-----UAUUCACGAAAACAAUGUACUCUUUCACCGCGUGAUUUAUCGAUUUUGACAAUGUUCAUUUUGCCUCAAAAGGCAUAACGCUUAAAUUA ...-.......((((......((((.-----...(((((........(....)........)))))..))))....................(((((....)))))....))))...... ( -17.59) >consensus GCAUCACAUUAAAGCGUUAAAGAUAU_____UAUUCACGAAAACAAUGCACUCUUUCACCGCGUGAUUUAUCGAUUUUGACAAUGUUCAUUUUGCCUCAAAAGGCAUAACGCUUAAAUUA ...........((((((((..((((.........(((((.....((........)).....)))))..))))....................(((((....)))))))))))))...... (-17.14 = -17.88 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:46:15 2006