Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,226,087 – 19,226,192 |
Length | 105 |
Max. P | 0.637004 |
Location | 19,226,087 – 19,226,192 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.66 |
Mean single sequence MFE | -25.59 |
Consensus MFE | -4.17 |
Energy contribution | -3.89 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.15 |
Mean z-score | -1.57 |
Structure conservation index | 0.16 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19226087 105 + 22224390 CGCUU-G--CUAACCCCAAGGACGGUG------------AAGAUGAUUCGUCUUCUUUUGCGCCCGAAUUUUCAUUCACGAAUUUUAUUAAACAUUUUAGCCAAGCGAAUAAUUCCAUGC (((((-(--((((((....))...(((------------((((.((((((..(.(....).)..)))))).)).))))).................)))).))))))............. ( -22.90) >DroSec_CAF1 13221 102 + 1 AGCUU-GGCCCCAUCCUUGGCAUGGUG------------AAGAUGAUUCGUCUUCUUUCGC-CCCGAAUUUU----CACGAAUUUUAUUAAACAUUUCGGCCAAGCAAAUAAUUCCAUGC .((((-(((((((....))).(((...------------((...(((((((.....((((.-..))))....----.)))))))...))...)))...)))))))).............. ( -27.50) >DroSim_CAF1 12999 102 + 1 AGCUU-GGCCCCAUCCUUGGCAUGGUG------------AAGAUGAUUCGUCUUCUUUCGC-CCCGAGUUUU----CACGAAUUUUAUUAAACAUUUCGGCCAAGCAAAUAAUUCCAUGC .((((-((((.....(((((...((((------------((((.((....)).)).)))))-))))))....----...(((.............))))))))))).............. ( -29.82) >DroEre_CAF1 11575 103 + 1 GGUUU---GGC-----CAAGGGUGGAGAGGAGCUGCUUUG-GAUGAUUCGUCUUCUUUCGC-CCC---UUUU----CACGAAUUUUAUUAAACAUUUCUGCCAAGCAAAUAAUUUCAUGC .((((---(((-----.....(((((((((.((......(-((((...)))))......))-.))---))))----)))(((.............))).))))))).............. ( -27.92) >DroYak_CAF1 12180 101 + 1 GACUUUGGGGC-----CAAGGGUGGUG------UGCUUUGGGAUGAUUCGUCUUCUUUUGC-CCC---UUUU----CACGAAUUUUAUUAAACAUUUCGGCCGAGCAAAUAAUCUCAUGC ........(((-----((((((.((((------......((((((...))))))....)))-)))---))).----...(((.............)))))))(((........))).... ( -19.82) >consensus AGCUU_GGCCC_A_CCCAAGGAUGGUG____________AAGAUGAUUCGUCUUCUUUCGC_CCCGA_UUUU____CACGAAUUUUAUUAAACAUUUCGGCCAAGCAAAUAAUUCCAUGC .....................((((...................(((((((..........................)))))))...............((...))........)))).. ( -4.17 = -3.89 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:53 2006