Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,176,204 – 19,176,303 |
Length | 99 |
Max. P | 0.585075 |
Location | 19,176,204 – 19,176,303 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -29.92 |
Consensus MFE | -20.61 |
Energy contribution | -20.78 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.36 |
Mean z-score | -1.61 |
Structure conservation index | 0.69 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585075 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19176204 99 - 22224390 AUUUCCCAGUUGGACCUGCAGUUGCAGGACGAAGCUGGUGGCGACAUUUCUAGCUUUAUAACCAAUGGCGAAUGGGACUUGUUAGGUAGGUCAUGUGCU ..((((((.((((.(((((....)))))..((((((((((....))...))))))))....))))))).)))...((((((.....))))))....... ( -32.70) >DroVir_CAF1 13324 98 - 1 -AUUUACAGCUGGACCUACAAUUACAGGAUGAAGCUGGCGGCGACAUCUCCAGUUUCAUAACAAAUGGCGAAUGGGACUUGUUAGGUGAGUUGAGAUAA -((((.(((((.(.((((.....(((((((((((((((.((.....)).))))))))))..(..((.....))..).)))))))))).))))))))).. ( -26.10) >DroGri_CAF1 12993 98 - 1 -AAUUACAGCUGGACCUGCAAUUACAGGACGAAGCUGGCGGCGACAUCUCAAGUUUCAUAACCAAUGGCGAAUGGGACUUGCUAGGUGAGUUGUUCUCA -.....(((((...((((......))))....)))))(((((..((((((((((..(((..((...))...)))..)))))..))))).)))))..... ( -30.50) >DroEre_CAF1 16423 99 - 1 AUUUCCCAGUUGGACCUGCAAUUGCAGGACGAAGCUGGUGGCGACAUUUCUAGCUUUAUAACCAAUGGCGAAUGGGACUUGUUAGGUAGGUAAAGAGCA ...((((((((((.(((((....)))))..((((((((((....))...))))))))....)))))......)))))...................... ( -29.40) >DroYak_CAF1 17368 99 - 1 AUUUCCCAGUUGGACCUGCAAUUGCAGGACGAAGCUGGUGGCGACAUUUCUAGCUUCAUCACCAAUGGCGAAUGGGACUUGUUAGGUAGGUUAAGAGCA ..((((((.((((.(((((....)))))..((((((((((....))...))))))))....))))))).)))...((((((.....))))))....... ( -33.10) >DroPer_CAF1 43594 99 - 1 GUUUGACAGUUGGAUCUGCAGUUGCAGGAUGAAGCUGGCGGAGACAUUUCUAGCUUCAUAACAAACGGAGAGUGGGAUCUGCUAGGUGAGUUGAGAAGA (((((.........(((((....)))))((((((((((.(....)....))))))))))..)))))(.(((......))).)................. ( -27.70) >consensus AUUUCACAGUUGGACCUGCAAUUGCAGGACGAAGCUGGCGGCGACAUUUCUAGCUUCAUAACCAAUGGCGAAUGGGACUUGUUAGGUAAGUUAAGAGCA ........(((((.(((((....)))))..((((((((.(....)....))))))))....))))).........((((((.....))))))....... (-20.61 = -20.78 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:14 2006