Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,174,125 – 19,174,236 |
Length | 111 |
Max. P | 0.670890 |
Location | 19,174,125 – 19,174,236 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -15.80 |
Energy contribution | -15.80 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 0.85 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19174125 111 - 22224390 AUUUAUGUUUUGCCUUUCUUAUCAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAAAUUUAGCUUCCCAAAAAUAAAAGAAUCCAUAUAAUCAUCUU .(((((((..((((((..((((..((((((...))))))..))))...)))))).)))))))((((((.....))))))................................ ( -20.70) >DroSec_CAF1 16396 108 - 1 UUUUAUCUUUUGCCUUUCUUAUCAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAACUUUAGCUUCCCAA-AAUAAAAGAACCCA--UAAUCAUCUU .....(((((((((((..((((..((((((...))))))..))))...))))).........((((((.....)))))).....-...)))))).....--.......... ( -18.50) >DroEre_CAF1 14226 108 - 1 UAUUAUUUUUUGCCUUUCUUAUGAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAAAUUUAGCUUCCCAA-AAUAAAAUAAUCCA--UAAUCAUCUC .((((((((.((((((..((((..((((((...))))))..))))...))))))........((((((.....)))))).....-...))))))))...--.......... ( -18.80) >DroYak_CAF1 15152 108 - 1 UUUUAUCUUUUGCCUUUCUUAUCAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAAAUUUAGCUUCCCAA-AAUAAAAUAAACCA--UAAUCAUCUC ((((((....((((((..((((..((((((...))))))..))))...))))))........((((((.....)))))).....-.)))))).......--.......... ( -16.00) >consensus UUUUAUCUUUUGCCUUUCUUAUCAAGAAAUUAUAUUUCUCUGUGAAUUGGGGCACACAUAAAGGGCUAAAAUUUAGCUUCCCAA_AAUAAAAGAAUCCA__UAAUCAUCUC ..........((((((..((((..((((((...))))))..))))...))))))........((((((.....))))))................................ (-15.80 = -15.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:10 2006