Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,170,562 – 19,170,658 |
Length | 96 |
Max. P | 0.602689 |
Location | 19,170,562 – 19,170,658 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.89 |
Mean single sequence MFE | -22.08 |
Consensus MFE | -15.44 |
Energy contribution | -15.63 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.10 |
Mean z-score | -1.49 |
Structure conservation index | 0.70 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19170562 96 - 22224390 GCUUACUUGCUGCUUUCCCAACUAGUGACGAA-AAUUAGUAAAGAGAAACAAUCGAUGGUUCUCAAAAAUGA-----------AAAUAAAAGUGGCGAA------------UUUGAUAUU ......((((..((((....((((((......-.))))))...(((((.((.....)).)))))........-----------.....))))..)))).------------......... ( -19.10) >DroSec_CAF1 12882 107 - 1 GCUUACUUGCUGCUUUCCCAACUAGUGACGAG-AGUUAGUAGCGAGAAACAAUCGAUGGUUCUCAAAGAGAA-----------UAACAAAAGUAGCGAAUACAUAACU-CAUUUGAUAUU ......((((((((((.(((.(((.((((...-.)))).)))(((.......))).)))(((((...)))))-----------.....))))))))))..........-........... ( -25.10) >DroEre_CAF1 10768 119 - 1 GCUUACUUGCCGCUUUCCGAACUAGUGACGAAAAAUUAGUUACGAGAAACAAUCGAUGGUUCUCAAAAAUAGUUCUACUUGUUUAAUAAAAGUAGCGAAUAAACAAUU-UAUUUGAUAUU ((......))(((.....(((((((((((.........)))))(((((.((.....)).))))).....))))))(((((.........))))))))......(((..-...)))..... ( -23.10) >DroYak_CAF1 11618 119 - 1 GCUUACCCGCUGCUUUUCGAUCUAGUGACGAAAAAUUAGUAACGAGAAACUAUCGAUGGUUCUCAAAAAUAGAUCUACUUCUUUUAUAAAAGUAGCAAAUACAUAAUAAUAAUUAAU-UU ........(((((((((.((((((((.((.........)).))(((((.(((....)))))))).....))))))............))))))))).....................-.. ( -21.02) >consensus GCUUACUUGCUGCUUUCCCAACUAGUGACGAA_AAUUAGUAACGAGAAACAAUCGAUGGUUCUCAAAAAUAA___________UAAUAAAAGUAGCGAAUACAUAAUU_UAUUUGAUAUU ........((((((((....((((((........))))))...(((((.(.......).)))))........................))))))))........................ (-15.44 = -15.63 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:07 2006