Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,157,246 – 19,157,351 |
Length | 105 |
Max. P | 0.582357 |
Location | 19,157,246 – 19,157,351 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 73.55 |
Mean single sequence MFE | -25.36 |
Consensus MFE | -13.98 |
Energy contribution | -14.26 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -1.63 |
Structure conservation index | 0.55 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19157246 105 - 22224390 -UUUUUACGAGCGACCAAACGAUCG----UUAAUUGUGGUUAACCCUAGAA-AACCUCUUAGGGGUUGCUACGAGUGAG--GACUCAAUACUUAAUCUAGCC------CAACCAAAUUU -.....((((.((......)).)))----)......((((((((((((((.-....)))..))))))((((.((.((((--.........)))).)))))).------.)))))..... ( -23.50) >DroSec_CAF1 13986 112 - 1 UUUUUUACGAGCGACCUAACGAUCG----UUAAUUGUGGUUAACCCUAGAA-AAUCUCUUAGGGGUUGCUACGAGUGAG--GAUUCAUUACCAAAUCUAACCCUAUACCAACCUAAUUU .(((((((.(((((.(....).)))----))..(((((((...(((((((.-....)).)))))...))))))))))))--)).................................... ( -25.50) >DroSim_CAF1 11975 113 - 1 -UUUUUACGAGCGACCUAACGAUCG----UUAAUUGUGGUUAACCCUAGAA-AACCUCUUAGGUGUUGCUACGAGUGAGGGGAUUCAUUACCUAAUCUAACCCUAUACCAACAAAAUUU -........(((((.(....).)))----))..(((((((.(((((((((.-....)).)))).))))))))))(((((((((((........))))...)))).)))........... ( -24.40) >DroEre_CAF1 16888 103 - 1 -GUUUUAAGAGCGGCCCAACGAUCGUGGGUUAAUUGUGGUUAACCCUAGAA-AACCAUUUAGGGGCUGCUAUGAGUGAG--GAUUCAGGAUG------AGU------CCAAUCAAAUUU -........((((((((.((....))((((((((....)))))))).....-..........)))))))).(((....(--(((((.....)------)))------))..)))..... ( -34.10) >DroYak_CAF1 14310 81 - 1 -AUUUUAUGAGCCGCCUAACGAUCG----UUAAUUGUGGUUAGCCCUAAAAAAACCUCAUAGGGGUUGCUAGGAGUGA---------------------------------CCAAAUUA -.....((((..((.....)).)))----)(((((.((((((..((((....(((((.....)))))..))))..)))---------------------------------)))))))) ( -19.30) >consensus _UUUUUACGAGCGACCUAACGAUCG____UUAAUUGUGGUUAACCCUAGAA_AACCUCUUAGGGGUUGCUACGAGUGAG__GAUUCAUUACC_AAUCUAACC_____CCAACCAAAUUU ....((((.(((((((..(((((.........))))).......(((((.........))))))))))))....))))......................................... (-13.98 = -14.26 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:06 2006