Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,094,597 – 19,094,700 |
Length | 103 |
Max. P | 0.999941 |
Location | 19,094,597 – 19,094,700 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 70.36 |
Mean single sequence MFE | -26.00 |
Consensus MFE | -13.64 |
Energy contribution | -15.67 |
Covariance contribution | 2.03 |
Combinations/Pair | 1.04 |
Mean z-score | -2.13 |
Structure conservation index | 0.52 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.955013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19094597 103 + 22224390 UUGU-----UGCUAGUUGCCAUCAAUGUCAACA-----AAAAAAAGAACCCUUUGCUACCAAUUAUUGGCCAAGUCCAAUAAACAGAAGGCUGCUGGAGGGGUAGGUGGGGUU ((((-----((...((((....))))..)))))-----).......((((((...(((((..(((((((......))))))).(((.......)))....)))))..)))))) ( -28.00) >DroSim_CAF1 4372 111 + 1 NNNN--NNNNNNNNNNNNNNNNNNNNNNCAACAAAAAAAAAAAAGGAACCCUAUGCAACCAAUUAUUGGCAAAGUCCAAUAAACAGAAGGCUGCUGGAGGGGUAGUUCGGGGU ....--.........................................(((((..((.(((..(((((((......))))))).(((.......)))....))).))..))))) ( -19.50) >DroYak_CAF1 4651 107 + 1 UU--GCUGCUGCUAGUUGACAUCAAUGUCAACACA---AAAAA-AAAACCCUAUGCAACCAAUUAUUGACCAAGUCCAAUAAACAGAAGGCUGCGGAAGGGGCAGGUGGGGGU ..--(((.(..((.(((((((....)))))))...---.....-....((((.((((.((..((((((........))))))......)).))))..))))...))..).))) ( -30.50) >consensus UU_______UGCUAGUUG_CAUCAAUGUCAACA_A___AAAAAAAGAACCCUAUGCAACCAAUUAUUGGCCAAGUCCAAUAAACAGAAGGCUGCUGGAGGGGUAGGUGGGGGU ..............(((((((....)))))))................((((.(((..((..((((((........)))))).(((....))).....)).)))...)))).. (-13.64 = -15.67 + 2.03)
Location | 19,094,597 – 19,094,700 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 70.36 |
Mean single sequence MFE | -25.03 |
Consensus MFE | -18.69 |
Energy contribution | -18.80 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.21 |
Structure conservation index | 0.75 |
SVM decision value | 4.71 |
SVM RNA-class probability | 0.999941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19094597 103 - 22224390 AACCCCACCUACCCCUCCAGCAGCCUUCUGUUUAUUGGACUUGGCCAAUAAUUGGUAGCAAAGGGUUCUUUUUUU-----UGUUGACAUUGAUGGCAACUAGCA-----ACAA (((((...(((((......((((....))))(((((((......)))))))..)))))....))))).......(-----(((((...(((....)))....))-----)))) ( -23.30) >DroSim_CAF1 4372 111 - 1 ACCCCGAACUACCCCUCCAGCAGCCUUCUGUUUAUUGGACUUUGCCAAUAAUUGGUUGCAUAGGGUUCCUUUUUUUUUUUUGUUGNNNNNNNNNNNNNNNNNNNNNN--NNNN ............((((...((((((......(((((((......)))))))..))))))..))))..........................................--.... ( -20.40) >DroYak_CAF1 4651 107 - 1 ACCCCCACCUGCCCCUUCCGCAGCCUUCUGUUUAUUGGACUUGGUCAAUAAUUGGUUGCAUAGGGUUUU-UUUUU---UGUGUUGACAUUGAUGUCAACUAGCAGCAGC--AA ........((((((((...((((((......(((((((......)))))))..))))))..))))....-.....---((((((((((....)))))))..))))))).--.. ( -31.40) >consensus ACCCCCACCUACCCCUCCAGCAGCCUUCUGUUUAUUGGACUUGGCCAAUAAUUGGUUGCAUAGGGUUCUUUUUUU___U_UGUUGACAUUGAUG_CAACUAGCA_______AA ............((((...((((((......(((((((......)))))))..))))))..))))................................................ (-18.69 = -18.80 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:40 2006