Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,093,334 – 19,093,433 |
Length | 99 |
Max. P | 0.646599 |
Location | 19,093,334 – 19,093,433 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 74.57 |
Mean single sequence MFE | -32.47 |
Consensus MFE | -18.62 |
Energy contribution | -19.57 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.05 |
Mean z-score | -1.50 |
Structure conservation index | 0.57 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.646599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19093334 99 - 22224390 GGGCCCGAAAGGGCUCCCACCACAGCAAUAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGAUGCCCG------UUGGGGAAACCAUUGUUCUUAACAUG ((((((....))))))(((....((((......(((((........)))))))))....)))(((((....((------...((....))..)).)))))..... ( -30.70) >DroPse_CAF1 3778 91 - 1 CUGCCCGCAAGGGAUCGCAUCACAGCAAUCUGCGCUUCAGCACAGAGGAGCUGCUCUUCUGGUAAUACAGUCGG-----UUUUCCCCA---------AGGAAAUA ...(((....)))((((.....((((..((((.((....)).))))...)))).....(((......))).)))-----)(((((...---------.))))).. ( -26.90) >DroSim_CAF1 2810 96 - 1 GGGCCCGAAAGGGCUCCCACCACAGCAACAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGGUGCCCG------UUGUGGAAACCAUUGUUCCUAAC--- ((((((....))))))...(((((((......(((((.((((..(((......)))...)))).)))))...)------)))))).................--- ( -34.50) >DroEre_CAF1 8164 99 - 1 GGGCCCGAAAGGGCUCCCACCACAGCAACAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGUUGCCGG------GUGUGGCCACCAUCGUACAUGACAUG ((((((....)))).((((((.(.(((((....(((((........)))))((((.....)))).))))).))------))).))...))............... ( -35.00) >DroYak_CAF1 3273 104 - 1 GGGCCCGAAAGUGCUCCCACCACAGCAACAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGUUGCCGG-CUGUGGUGUGGACACCAUCGUGCAUGACAUG ..((.(((..(((.((((((((((((.......(((((........)))))........((((.....)))))-)))))))).))))))..))).))........ ( -40.20) >DroPer_CAF1 3711 91 - 1 CCGCCCGCAAGGGAUCGCAUCACAGCAAUCUGCGCUUCAGCACAGAGGAGCUGCUCUUCUGGUAAUACAGUCGG-----UUUUCCCCA---------AGGAAAUA ((((((....))).........((((..((((.((....)).))))...)))).....(((......))).)))-----.(((((...---------.))))).. ( -27.50) >consensus GGGCCCGAAAGGGCUCCCACCACAGCAACAUACGCUUCACCACCGAGGAGCUGCUCUACUGGUAAGAUGCCCG______UUGUGGACACCAU_GU_CAUGACAUG ((((((....))))))..((((.((((......(((((........)))))))))....)))).......................................... (-18.62 = -19.57 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:39 2006