Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,067,347 – 19,067,446 |
Length | 99 |
Max. P | 0.764797 |
Location | 19,067,347 – 19,067,446 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 65.88 |
Mean single sequence MFE | -36.60 |
Consensus MFE | -21.48 |
Energy contribution | -23.10 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.19 |
Mean z-score | -1.30 |
Structure conservation index | 0.59 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19067347 99 - 22224390 AAGGGUUGCUCCUGCUCC------UGUUCCUGCUCCUGCUCCAAUUGCUGUUGCGACGAGGCCGCUGGAUAGUUAUCCGCCGGCGGUGG---CUGCGUGGUGGUUUCA ....(((((..(.((...------.(((...((....))...))).)).)..)))))((((((((((..((((((.(((....))))))---)))..)))))))))). ( -33.60) >DroPse_CAF1 20996 93 - 1 N------NNNNNNNNNNN------NNNNNNNNNNNNNNNNNNN---NNNNNNGGGAGGAUGCCGCCGGAUAGUUGUCGGCCGGCGGCAGCUGCUGCGUGGUCGUCUCC .------...........------...................---.......(((((..((((((((.(((((((((.....)))))))))))).)))))..))))) ( -29.00) >DroSec_CAF1 18953 105 - 1 AAGGAUUGCUCCUGCUCCUGCUCCUGCUCUUGCUCCUGCUCCAGUUGCUGUUGCGACGAGGCCGCUGGAUAGUUAUCCGCCGGCGGUGG---CUGCGUAGUGGUCUCA ..(((..((....((....((....))....))....))))).(((((....)))))((((((((((..((((((.(((....))))))---)))..)))))))))). ( -42.70) >DroSim_CAF1 20888 105 - 1 AAGGAUUGCUCCUGCUCCUGCUCCUGUUCCUGCUCCUGCUCCAGUUGCUGUUGCGACGAGGCCGCUGGAUAGUUAUCCGCCGGCGGUGG---CUGCGUAGUGGUCUCA ..(((..((....((....((....))....))....))))).(((((....)))))((((((((((..((((((.(((....))))))---)))..)))))))))). ( -41.10) >consensus AAGGAUUGCUCCUGCUCC______UGUUCCUGCUCCUGCUCCAGUUGCUGUUGCGACGAGGCCGCUGGAUAGUUAUCCGCCGGCGGUGG___CUGCGUAGUGGUCUCA .((((....))))..............................(((((....)))))((((((((((..(((....(((((...)))))...)))..)))))))))). (-21.48 = -23.10 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:27 2006