Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,066,000 – 19,066,090 |
Length | 90 |
Max. P | 0.543393 |
Location | 19,066,000 – 19,066,090 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 93.15 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -23.74 |
Energy contribution | -24.11 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.09 |
Mean z-score | -1.52 |
Structure conservation index | 0.84 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19066000 90 + 22224390 GCCAAGUAUCAACUGCAAGUCCAUGAAAACGGAACCGGAUCAGCUGCUUGGCGCAGUGGCACAUCUUUCAUCUCAAUCCGCAACCGGAUC ((((((((.(..(((....(((.(....).)))..)))....).))))))))((....))...............(((((....))))). ( -21.10) >DroSec_CAF1 17631 90 + 1 GCCAUGUGUCAACUGCAAGUCCAUGGAAACGGAACCGGAUCAGCUGCUUGGCGCAGUGGCACAUCUUUCAUCUCUGUCCGCAACCGGAUC (((((((((((((.((..((((..(....)(....)))))..)).).)))))))).))))...............(((((....))))). ( -30.30) >DroSim_CAF1 19572 90 + 1 GCCAUGUGUCAACUGCAAGUCCAUGGAAACGGAACCGGAUCAGCUGCUUGGCGCAGUGGCACAUCUUUCAUCUCUGUCCGCAACCGGAUC (((((((((((((.((..((((..(....)(....)))))..)).).)))))))).))))...............(((((....))))). ( -30.30) >DroYak_CAF1 18718 90 + 1 GCCAAGUGUCAAGUGCAAGUCCGUGAAAACUAAACCGGAUCAGCUGCUUGACGCAGUGGCACAUCUUUCAUCUGCGUCCGCAACCGGAUC ((((.(((((((((((..(((((............)))))..)).)))))))))..))))...............(((((....))))). ( -31.90) >consensus GCCAAGUGUCAACUGCAAGUCCAUGAAAACGGAACCGGAUCAGCUGCUUGGCGCAGUGGCACAUCUUUCAUCUCUGUCCGCAACCGGAUC ((((((((((((..((..((((..............))))..))...)))))))).))))...............(((((....))))). (-23.74 = -24.11 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:24 2006