Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,060,045 – 19,060,142 |
Length | 97 |
Max. P | 0.595059 |
Location | 19,060,045 – 19,060,142 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 77.39 |
Mean single sequence MFE | -14.30 |
Consensus MFE | -10.19 |
Energy contribution | -9.23 |
Covariance contribution | -0.96 |
Combinations/Pair | 1.25 |
Mean z-score | -1.36 |
Structure conservation index | 0.71 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595059 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19060045 97 - 22224390 AUGACACUCGAACUGAGAACAGUAUGC-CCAC-----AAAAAGUGCGAAAGAUAAAAGAUAGAUGAUGAAUUACUCAUAAAUUAUCCAAUCAAAUCUCAAAUC .............(((((.........-((((-----.....))).)...(((....(((((...((((.....))))...)))))..)))...))))).... ( -11.80) >DroSec_CAF1 11926 85 - 1 -------------UGAGAACAGUACGCACUGU-----AAAAAGUGCGAAUGAUGAAAGAUAGAUGACAAAUUACUCAUCAAUUAUCCAAUCAAAUCUCAAAUC -------------(((((......((((((..-----....))))))..((((....(((((((((........)))))...))))..))))..))))).... ( -22.40) >DroSim_CAF1 13435 85 - 1 -------------UGAGAACAGUACGUGCUGU-----AAAAAGUGCGAAUGAUGAAAGAUAGAUGACAAAUUACUCAUAAAUUAUCAAAUCAAAUCUCAAAUC -------------(((((......((..((..-----....))..))..((((....(((((((((........))))...)))))..))))..))))).... ( -17.30) >DroEre_CAF1 12446 101 - 1 CAAA-GCCCAAGCUCAGAACAGUAUGC-CCAAACAGUAAGAAGUGCGAAAGAUGAAAGAUAGAUGACAAAUUACUCGUUAAAUAUCAAGUCAAAUCUGUAAUC ...(-((....)))((((.........-.................(....).(((..((((..((((.........))))..))))...)))..))))..... ( -11.10) >DroYak_CAF1 13441 97 - 1 AUGAGAACCAAACUUAGAACAGUAUGC-CCAC-----AAAAAGUGCGAAUGAUGAAAGAUAGAUGACAAAUGACUCGUAAAUUAUCAAAUCAAAUCUGAAAUC .............(((((.........-((((-----.....))).)..((((....(((((((((........))))...)))))..))))..))))).... ( -8.90) >consensus ___A____C_A_CUGAGAACAGUAUGC_CCAC_____AAAAAGUGCGAAUGAUGAAAGAUAGAUGACAAAUUACUCAUAAAUUAUCAAAUCAAAUCUCAAAUC .............(((((...((((.................))))....(((....((((.((((........))))....))))..)))...))))).... (-10.19 = -9.23 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:11 2006