Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,106,088 – 2,106,192 |
Length | 104 |
Max. P | 0.970925 |
Location | 2,106,088 – 2,106,192 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -17.55 |
Energy contribution | -19.55 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.15 |
Mean z-score | -2.32 |
Structure conservation index | 0.68 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.970925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2106088 104 + 22224390 UAAUGCCACUAACAACGUCGUGCGAUAACGAUAGGCAUAUUUCGAUAGUUCGCUAUCGAUAAUCGCU---UUUUGUCUCCACUGGCCUUUUGCGCAUUCUACUUUU-G .(((((((........((((((.((..((((.((((.....(((((((....))))))).....)))---).)))).))))).)))....)).)))))........-. ( -23.60) >DroSec_CAF1 6718 99 + 1 UAAUGCCACUAACAACGCCGUUCGAUAAAGAUAGGCUCA--UCGAUAGCUCACUAUCGAUAGUCGCUUAUUUUUGUCUCCACUGGCCUUUUGC--UUUCAACU----- ................(((((..(((((((((((((.((--(((((((....)))))))).)..)))))))))))))...)).))).......--........----- ( -27.50) >DroEre_CAF1 7297 105 + 1 UAAUGCCACCGACAACGUCGUGCGAUAACGAUAAUCGUAUUUCGAUAGCUCACUAUCGAUAGCCGCUUU-UCUUGUCUCCACUGACGCUCUGC--AUUUUACUUUUCA .(((((....((...(((((((.(((((.((.((.((..(.(((((((....))))))).)..)).)).-)))))))..))).)))).)).))--))).......... ( -23.10) >DroYak_CAF1 6619 105 + 1 UAAUGCCACCGACAACGUCGUGCGAUAACGAUAAGCGUACUUCGAUAGCUCUCUAUCGAUAGCCGUUUA-UUCUGUCUCCACUGGCGUUCUGC--AUUCUGCUUCUUG .(((((((..(((...)))(((.((((..((((((((....(((((((....)))))))....))))))-)).))))..))))))))))..((--.....))...... ( -28.90) >consensus UAAUGCCACCAACAACGUCGUGCGAUAACGAUAAGCGUAUUUCGAUAGCUCACUAUCGAUAGCCGCUUA_UUUUGUCUCCACUGGCCUUCUGC__AUUCUACUUUU_G .............(((((((((.(((((...((((((....(((((((....)))))))....))))))...)))))..))).))))))................... (-17.55 = -19.55 + 2.00)
Location | 2,106,088 – 2,106,192 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -27.82 |
Consensus MFE | -21.27 |
Energy contribution | -20.65 |
Covariance contribution | -0.62 |
Combinations/Pair | 1.19 |
Mean z-score | -1.75 |
Structure conservation index | 0.76 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2106088 104 - 22224390 C-AAAAGUAGAAUGCGCAAAAGGCCAGUGGAGACAAAA---AGCGAUUAUCGAUAGCGAACUAUCGAAAUAUGCCUAUCGUUAUCGCACGACGUUGUUAGUGGCAUUA .-....................((((.(((.(((....---.(((((...(((((((((....)))........))))))..))))).....))).))).)))).... ( -23.50) >DroSec_CAF1 6718 99 - 1 -----AGUUGAAA--GCAAAAGGCCAGUGGAGACAAAAAUAAGCGACUAUCGAUAGUGAGCUAUCGA--UGAGCCUAUCUUUAUCGAACGGCGUUGUUAGUGGCAUUA -----........--.......((((.((....))......(((((((((((((((....)))))))--)).(((..((......))..)))))))))..)))).... ( -29.30) >DroEre_CAF1 7297 105 - 1 UGAAAAGUAAAAU--GCAGAGCGUCAGUGGAGACAAGA-AAAGCGGCUAUCGAUAGUGAGCUAUCGAAAUACGAUUAUCGUUAUCGCACGACGUUGUCGGUGGCAUUA ..........(((--((.(((((((..((....))...-...((((...(((((((....)))))))...(((.....)))..))))..)))))..))....))))). ( -29.50) >DroYak_CAF1 6619 105 - 1 CAAGAAGCAGAAU--GCAGAACGCCAGUGGAGACAGAA-UAAACGGCUAUCGAUAGAGAGCUAUCGAAGUACGCUUAUCGUUAUCGCACGACGUUGUCGGUGGCAUUA ......((.....--)).....((((((((.(((.((.-(((.(((((.(((((((....)))))))))).)).)))))))).)))).((((...)))).)))).... ( -29.00) >consensus C_AAAAGUAGAAU__GCAAAACGCCAGUGGAGACAAAA_UAAGCGACUAUCGAUAGUGAGCUAUCGAAAUACGCCUAUCGUUAUCGCACGACGUUGUCAGUGGCAUUA ......................((((.(((.(((...............(((((((....)))))))..........((((......)))).))).))).)))).... (-21.27 = -20.65 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:18 2006