Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,041,874 – 19,041,987 |
Length | 113 |
Max. P | 0.516788 |
Location | 19,041,874 – 19,041,987 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.95 |
Mean single sequence MFE | -42.98 |
Consensus MFE | -29.24 |
Energy contribution | -29.30 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.50 |
Structure conservation index | 0.68 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19041874 113 - 22224390 UAAAACCUGGCCAAGGGGUAAGUGUUUGUUGCAAGGCGCUUGUGGUGUGGCACUCAGUGCGGUGCAAUAGCAGCGU-------CGGCAUUUUCCGGCGGCCGCAGAAGUGGCACCAAGCA ..((((((.(((....))).)).))))((((((..(((((.(((......)))..)))))..)))))).((..(((-------(((......))))))(((((....))))).....)). ( -42.50) >DroSec_CAF1 10510 112 - 1 -AAAAACGGGCCAAGCGGUAAGUGUUUGUUGCAAUGAGCUUGUGGUGGGGCAAUCAGUGCGGUGCAAUAGCAGCGU-------CGGCAUUUUCCGGCGGCCGCGGAAGCGGCAACAAGCA -....((..(((....)))..))((((((((((.(((((((......))))..))).)))(.(((....))).)((-------(((......))))).(((((....)))))))))))). ( -43.00) >DroSim_CAF1 12182 112 - 1 -AAAAACGGGCCAAGCGGUAAGUGUUUGUUGCAAUGAGCUUGUGGUGGGGCAAUCAGUGCGGUGCAAUAGCAGCGU-------CGGCAUUUUCCGGCGGCCGCGGAAGCGGCAACAAGCA -....((..(((....)))..))((((((((((.(((((((......))))..))).)))(.(((....))).)((-------(((......))))).(((((....)))))))))))). ( -43.00) >DroYak_CAF1 10143 120 - 1 UAUCAGCUGGCCAAGCGGUAAGUGUUUGUUGCAAGGGGCGAGUGCAGGGGCAUACAGUGCGCUGCAGCUGCAGCAUCAGCGGGCGGCAUUUUCCGGCGGCCACAAAAGCGGCAAAAAGAA ..((.(((((..((((.((..((...(((((((.(..((.((((((..(.....)..))))))))..))))))))...))..)).)).))..))))).(((.(....).))).....)). ( -43.40) >consensus _AAAAACGGGCCAAGCGGUAAGUGUUUGUUGCAAGGAGCUUGUGGUGGGGCAAUCAGUGCGGUGCAAUAGCAGCGU_______CGGCAUUUUCCGGCGGCCGCAGAAGCGGCAACAAGCA .........(((....((.(((((((((((((.....(((((((.((.......)).))))).))....)))))).........))))))).))))).(((((....)))))........ (-29.24 = -29.30 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:49 2006