Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,039,032 – 19,039,138 |
Length | 106 |
Max. P | 0.826071 |
Location | 19,039,032 – 19,039,138 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 89.15 |
Mean single sequence MFE | -37.72 |
Consensus MFE | -29.54 |
Energy contribution | -29.60 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.24 |
Mean z-score | -1.94 |
Structure conservation index | 0.78 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19039032 106 - 22224390 CGGUUGGUAUUCUUCCAGAGAAAGCGAAACGGACUCCACGGAUACCGGAACGGGAUUCCAGGCUCAAAACGGAAAAGGUUUUGGUGCCGGCCGCCAGCCGGAAAAU ((((((((.(((((...))))).((.....(((.(((.(((...))).....))).))).((((((((((.......))))))).))).)).))))))))...... ( -37.50) >DroSec_CAF1 7411 106 - 1 CGGUUGGUAUACUUCAAGAGAAAGCGAAACUGACUCCAGGGAGACCGGAACGGGAUUCCAGGCUCAAAACGGAAAAGGUCGUGGUGCCGGCCGCCAACCGGAAAAU ((((((((.........(((...(.(((.(((..(((.((....))))).)))..))))...)))...........(((((......)))))))))))))...... ( -35.50) >DroSim_CAF1 7244 106 - 1 CGGUUGGUAUACUUCCAGAGAAAGCGAAACUGACUCCAGGGAGACCGGAACGGGAUUCCAGGCUCAAAACGGAAAAGGUCGUGGUGCCGGCCGCCAGCCGGAAAAU ((((((((....((((.(((...(.(((.(((..(((.((....))))).)))..))))...))).....))))..(((((......)))))))))))))...... ( -36.60) >DroYak_CAF1 7277 106 - 1 CGGUUGGUAUACUUCCAAAGACGGUGAAUCUGACACCGGCGAGAGCGGAACGGGAUUCGAGGCUCGAAACGGAAAAGGUCGUGGGUCCGACCGCCAGCCGGAAAAC ((((((((....((((.....(((((.......))))).((((..((((......))))...))))....))))..(((((......)))))))))))))...... ( -41.30) >consensus CGGUUGGUAUACUUCCAGAGAAAGCGAAACUGACUCCAGGGAGACCGGAACGGGAUUCCAGGCUCAAAACGGAAAAGGUCGUGGUGCCGGCCGCCAGCCGGAAAAU ((((((((....((((......(((....(((....)))((((.((......)).))))..)))......))))..(((((......)))))))))))))...... (-29.54 = -29.60 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:46 2006