Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,009,200 – 19,009,303 |
Length | 103 |
Max. P | 0.717761 |
Location | 19,009,200 – 19,009,303 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 86.87 |
Mean single sequence MFE | -28.83 |
Consensus MFE | -20.52 |
Energy contribution | -20.52 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.71 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19009200 103 - 22224390 AGCUCGGUUGCAUGUGCAUGUGCGUACGUUCGUAUCUAC----UUAUCUCUACCUAUUAUGUCCAAUGCCAAUGGCUGACUGCAGCUGCCAUUUGAGCACUUCAUUU .((((((..(((..((((.(((.((((....)))).)))----.................(((....(((...))).)))))))..)))...))))))......... ( -23.90) >DroSim_CAF1 26188 103 - 1 AGCUCGGUUGCAUGUGCAUGUGCGUACGUUCGUAUCUAC----GUAUCUCUGCCUAUUAUGUCCAAUGCCAAUGGCUGACUGCAGCUGCCAUUUGAGCACUUCAUUU .(((((((.(((((.(((.(((((((.((....)).)))----))))...)))....))))).....)))((((((...........)))))).))))......... ( -26.60) >DroEre_CAF1 30582 101 - 1 AGCUCGGUUGCAU------GUGCGUACGUACGUAUCUACAUACGUAUCUCCACAAAUUGUGGCCAAUGCCAAUGGCUGACUGCAGCUGCCAUUCGAGCACUUAAUUU .(((((((..(((------(((.(...((((((((....))))))))..)))))...))..)))......((((((...........)))))).))))......... ( -32.90) >DroYak_CAF1 32011 101 - 1 AGCUCGGUUGCAU------GUGCGUACGUUCGUAUCUACGUAUGUAUCUCUACCUAUUAUGGCCAAUGCCAAUGGCUGAUUGCAGCUGCCACUUGAGCACUUAAUAU .(((((((.((..------((((((((((........))))))))))............((((....))))..(((((....))))))).)).)))))......... ( -31.90) >consensus AGCUCGGUUGCAU______GUGCGUACGUUCGUAUCUAC____GUAUCUCUACCUAUUAUGGCCAAUGCCAAUGGCUGACUGCAGCUGCCAUUUGAGCACUUAAUUU .(((((((.((((......))))((((....))))................................)))...(((((....))))).......))))......... (-20.52 = -20.52 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:36 2006