Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,991,560 – 18,991,657 |
Length | 97 |
Max. P | 0.557043 |
Location | 18,991,560 – 18,991,657 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 92.96 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -22.36 |
Energy contribution | -22.43 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.56 |
Structure conservation index | 0.82 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18991560 97 + 22224390 UUUCGGGCGCCUUGGUGAUAAACUUGCAUACUUUUGGGCAUUCGAUCGAGACCUUCUUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCCCCC ....((((((....))........((((((..(((((((((((....)))......(((((...))))).......)))))))).)))))))))).. ( -27.40) >DroSec_CAF1 14056 96 + 1 UUCCGGGCGCCUUAGUGAUGGACUUGCAUACUUUUGGGCAUUCGAUCGAGACCUUCUUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCC-CC ....((((.((........))...((((((..(((((((((((....)))......(((((...))))).......)))))))).)))))))))-). ( -28.10) >DroEre_CAF1 13759 96 + 1 UUUCGGGCGC-UCAGUGACCGACUUGCAUACUUUUGGGCAUUCGAUCGAGACCUUCUUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCUCCC ....(((.((-..(((.....)))((((((..(((((((((((....)))......(((((...))))).......)))))))).)))))))).))) ( -25.10) >DroYak_CAF1 14180 97 + 1 UUUCGGGCGCCUCAGUGACCGACUUGCAUACUUUUGGGCAUUGGUUCGAGACCUUCGUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCUCCC ..((((.(((....))).)))).(((((((..((((((((..((((((((...))))((((...))))....)))))))))))).)))))))..... ( -28.20) >consensus UUUCGGGCGCCUCAGUGACCGACUUGCAUACUUUUGGGCAUUCGAUCGAGACCUUCUUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCCCCC ....((((.....(((.....)))((((((..((((((((.....(((((.....)))))....((.......)).)))))))).)))))))))).. (-22.36 = -22.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:27 2006