Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,968,277 – 18,968,393 |
Length | 116 |
Max. P | 0.606981 |
Location | 18,968,277 – 18,968,393 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.62 |
Mean single sequence MFE | -30.32 |
Consensus MFE | -23.48 |
Energy contribution | -24.56 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.77 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18968277 116 - 22224390 UAUGUUGGCAAUA--AGCAACGGCCCACCC--AAAUUAGGAGUUAUUUUGACCAGUCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC ..((((.((((..--.((((((.(((((((--......)).))..((((((....))))))..........))).)))))).......((((....)))).......)))).)))).... ( -33.60) >DroSec_CAF1 19621 116 - 1 UAAGUUGGCAAUA--AGCAACGGCCCACCC--AAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC ...(((.((((..--.((((((.(((((((--......)).))............((......))......))).)))))).......((((....)))).......)))).)))..... ( -31.20) >DroSim_CAF1 4079 116 - 1 UAAGUUGGCAAUA--AGCAACGGCCCACCC--AAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC ...(((.((((..--.((((((.(((((((--......)).))............((......))......))).)))))).......((((....)))).......)))).)))..... ( -31.20) >DroEre_CAF1 10183 109 - 1 UAAGUUGGCAAUA--AGCAACGGCCCACCCC-AAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAA--------GUUGCGCAAAGUGCUGAGGUCGGAGGAAAAUUUGUGGGCAAAAC ...((((......--..)))).((((((.((-......)).....((((((((..((......))...--------...((((...))))...))))))))........))))))..... ( -29.70) >DroYak_CAF1 11442 120 - 1 UAAGUUGGCAAUAGAGGCAACGGCAGAGCCAAAAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC ...(((.((((.....((((((.(((..((........))..)).......((..((......))......))).)))))).......((((....)))).......)))).)))..... ( -25.90) >consensus UAAGUUGGCAAUA__AGCAACGGCCCACCC__AAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC ...(((.((((.....((((((.(((.........((((((....))))))....((......))......))).))))))......(((((....)))))......)))).)))..... (-23.48 = -24.56 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:15 2006