Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,967,063 – 18,967,159 |
Length | 96 |
Max. P | 0.987764 |
Location | 18,967,063 – 18,967,159 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 90.25 |
Mean single sequence MFE | -26.62 |
Consensus MFE | -23.04 |
Energy contribution | -25.20 |
Covariance contribution | 2.16 |
Combinations/Pair | 1.11 |
Mean z-score | -2.02 |
Structure conservation index | 0.87 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18967063 96 + 22224390 AUUACUUGUUUGCGGUUUUUAUUAUAUCAUUCUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCUGCUGACGAUGAUGAUGCUGCUGC- ...........((((................(((((.....)))))..((((((..(((..((.(((((....))))).)))))..))))))))))- ( -26.40) >DroSec_CAF1 18371 96 + 1 AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGCUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCCGCUGACGAUGAUGAUGCUGCUGC- ...........((((...............((((((.....)))))).((((((..(((..((.(((((....))))).)))))..))))))))))- ( -30.60) >DroSim_CAF1 2786 96 + 1 AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGCUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCUGCUGACGAUGAUGAUGCUGCUGC- ...........((((...............((((((.....)))))).((((((..(((..((.(((((....))))).)))))..))))))))))- ( -30.50) >DroEre_CAF1 8953 96 + 1 AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGGUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCUGCUGACGAUGAUGAUGCUGCUGC- ....((((((((((..(.............)..))...))))))))..(((((..((((((((.(((((....))))).)))).))))..))))).- ( -26.42) >DroAna_CAF1 8011 87 + 1 AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGCUCAUGUCAAAUGGGCUCAGCAUUGUCACAUUCUUGGCU-CCGCUUCC---------GCUUCCGCA ..........(((((...............((((((.....))))))..(((...((((......)))).-..)))...---------....))))) ( -19.20) >consensus AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGCUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCUGCUGACGAUGAUGAUGCUGCUGC_ ...........((((...............((((((.....)))))).(((((((((((..((.(((((....))))).))))))))))))))))). (-23.04 = -25.20 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:14 2006