Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 325,001 – 325,121 |
Length | 120 |
Max. P | 0.936821 |
Location | 325,001 – 325,121 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.42 |
Mean single sequence MFE | -31.61 |
Consensus MFE | -23.10 |
Energy contribution | -22.86 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.22 |
Mean z-score | -2.69 |
Structure conservation index | 0.73 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.936821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 325001 120 + 22224390 ACCUCAUCCAUGAUGUCCUUCUCGUUCCACUCGAUAUCGGGGUUCUUAGCCAUUUCCACCAUGGCAUCUAGAAGAGCCAAUCGCCUCUUGGCGCCCACAUCAUUUUCAUCGAUAUCAUCC ....((((...)))).................(((((((((((((((.(((((.......)))))......)))))))...((((....))))...............)))))))).... ( -30.10) >DroVir_CAF1 111903 120 + 1 ACCUCAUCCAUGAUGUCCUUUUCGUUCCAUUCGAUAUCGGGAUUCUUGGCCAUCUCGACCAUGGCGUCGAGCAGUGCCAAACGACGCUUGGCGCCAACAUCGUUCUCAUCGAUGUCAUCC .((..((((.(((((((...............)))))))))))....))............(((((((((((.((.....))...)))))))))))((((((.......))))))..... ( -36.06) >DroSim_CAF1 1994 120 + 1 ACCUCAUCCAUGAUGUCCUUCUCGUUCCACUCGAUAUCGGGGUUCUUAGCCAUUUCCACCAUGGCAUCUAGAAGAGCCAAUCGCCUCUUGGCACCCACAUCAUUUUCAUCGAUAUCAUCC ....((((...)))).................(((((((((((((((.(((((.......)))))......)))))))....(((....)))................)))))))).... ( -29.20) >DroYak_CAF1 2205 120 + 1 ACCUCAUCCAUGAUGUCCUUCUCGUUCCACUCGAUAUCGGGGUUCUUGGCCAUUUCCACCAUGGCAUCCAGGAGAGCCAAUCGCCUCUUGGCACCCACAUCAUUCUCAUCGAUAUCGUCC .........((((((((....(((.......))).....((((.....(((((.......)))))..(((((((.((.....))))))))).))))..............)))))))).. ( -31.00) >DroMoj_CAF1 98980 120 + 1 ACCUCAUCCAUGAUGUCCUUCUCGUUCCAUUCGAUGUCCGGAUUCUUGGCCAUUUCCACCAUCGCAUCGAGCAGCGCCAGACGACGCUUGGCGCCCACAUCGUUCUCAUCGAUGUCAUCG ...........((((........((((.((.(((((...(((............)))..))))).)).)))).(((((((.......)))))))..((((((.......)))))))))). ( -31.70) >consensus ACCUCAUCCAUGAUGUCCUUCUCGUUCCACUCGAUAUCGGGGUUCUUGGCCAUUUCCACCAUGGCAUCGAGAAGAGCCAAUCGCCUCUUGGCGCCCACAUCAUUCUCAUCGAUAUCAUCC .........(((((((((((((.......((((....)))).......(((((.......)))))....))))).(((((.......)))))..................)))))))).. (-23.10 = -22.86 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:15 2006