Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,832,046 – 18,832,157 |
Length | 111 |
Max. P | 0.995790 |
Location | 18,832,046 – 18,832,157 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.74 |
Mean single sequence MFE | -30.38 |
Consensus MFE | -26.62 |
Energy contribution | -26.95 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.71 |
Structure conservation index | 0.88 |
SVM decision value | 2.62 |
SVM RNA-class probability | 0.995790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18832046 111 + 22224390 UUACUUAUAUUCAUAUCC------AUAUCCUUUUGCUGGAACG---CAGCUGCAGCUGCCGCAAAUUGCGGCACGACUUGUGGCAUGCUCCACUUUUAUUAACUUUUUAAUGCAGCAAUG ..................------........((((((....(---((((..((((((((((.....)))))).).).))..)).)))........((((((....)))))))))))).. ( -30.00) >DroPse_CAF1 93132 112 + 1 UUACUCAUAUUCAUAUCC------AUAUCCUUU--CUGGCAUGGAGCCGCUGCAGCUGCCGCAAAUUGCGGCACGACUUGUGGCAUGCUCCACUUUUAUUAACUUUUUAAUGCAGCAAUG ...............(((------((..((...--..)).)))))...(((((((.((((((.....))))))).....((((......)))).................)))))).... ( -32.30) >DroSec_CAF1 68900 111 + 1 UUAGUUAUAUUCAUAUCC------AUAUCCUUUUGCUGGAACG---CAGCUGCAGCUGCCGCAAAUUGCGGCACGACUUGUGGCAUGCUCCACUUUUAUUAACUUUUUAAUGCAGCAAUG ..................------........((((((....(---((((..((((((((((.....)))))).).).))..)).)))........((((((....)))))))))))).. ( -30.00) >DroSim_CAF1 49116 111 + 1 UUACUUAUAUUCAUAUCC------AUAUCCUUUUGCUGGAACG---CAGCUGCAGCUGCCGCAAAUUGCGGCACGACUUGUGGCAUGCUCCACUUUUAUUAACUUUUUAAUGCAGCAAUG ..................------........((((((....(---((((..((((((((((.....)))))).).).))..)).)))........((((((....)))))))))))).. ( -30.00) >DroEre_CAF1 66628 117 + 1 UUACUUAUAUUCAUAUCCAUAUCCAUAUCCUUUUGCUGGAACG---CAGCUGCAGCUGCCGCAAAUUGCGGCACGACUUGUGGCAUGCUCCACUUUUAUUAACUUUUUAAUGCAGCAAUG ................................((((((....(---((((..((((((((((.....)))))).).).))..)).)))........((((((....)))))))))))).. ( -30.00) >DroYak_CAF1 65718 111 + 1 UUACUUAUAUUCAUAUCC------AUAUCGCUUUGCUGGAACG---CAGCUGCAGCUGCCGCAAAUUGCGGCACGACUUGUGGCAUGCUCCACUUUUAUUAACUUUUUAAUGCAGCAAUG ..................------........((((((....(---((((..((((((((((.....)))))).).).))..)).)))........((((((....)))))))))))).. ( -30.00) >consensus UUACUUAUAUUCAUAUCC______AUAUCCUUUUGCUGGAACG___CAGCUGCAGCUGCCGCAAAUUGCGGCACGACUUGUGGCAUGCUCCACUUUUAUUAACUUUUUAAUGCAGCAAUG ...........................(((.......)))........(((((((.((((((.....))))))).....((((......)))).................)))))).... (-26.62 = -26.95 + 0.33)
Location | 18,832,046 – 18,832,157 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.74 |
Mean single sequence MFE | -31.48 |
Consensus MFE | -26.98 |
Energy contribution | -27.01 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -2.15 |
Structure conservation index | 0.86 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18832046 111 - 22224390 CAUUGCUGCAUUAAAAAGUUAAUAAAAGUGGAGCAUGCCACAAGUCGUGCCGCAAUUUGCGGCAGCUGCAGCUG---CGUUCCAGCAAAAGGAUAU------GGAUAUGAAUAUAAGUAA ....(((((..................((((......)))).(((..((((((.....))))))))))))))..---(((((((.(.....)...)------))).)))........... ( -30.40) >DroPse_CAF1 93132 112 - 1 CAUUGCUGCAUUAAAAAGUUAAUAAAAGUGGAGCAUGCCACAAGUCGUGCCGCAAUUUGCGGCAGCUGCAGCGGCUCCAUGCCAG--AAAGGAUAU------GGAUAUGAAUAUGAGUAA ..(((((((..................((((......)))).(((..((((((.....)))))))))))))))).((((((((..--...)).)))------)))............... ( -35.80) >DroSec_CAF1 68900 111 - 1 CAUUGCUGCAUUAAAAAGUUAAUAAAAGUGGAGCAUGCCACAAGUCGUGCCGCAAUUUGCGGCAGCUGCAGCUG---CGUUCCAGCAAAAGGAUAU------GGAUAUGAAUAUAACUAA ....(((((..................((((......)))).(((..((((((.....))))))))))))))..---(((((((.(.....)...)------))).)))........... ( -30.40) >DroSim_CAF1 49116 111 - 1 CAUUGCUGCAUUAAAAAGUUAAUAAAAGUGGAGCAUGCCACAAGUCGUGCCGCAAUUUGCGGCAGCUGCAGCUG---CGUUCCAGCAAAAGGAUAU------GGAUAUGAAUAUAAGUAA ....(((((..................((((......)))).(((..((((((.....))))))))))))))..---(((((((.(.....)...)------))).)))........... ( -30.40) >DroEre_CAF1 66628 117 - 1 CAUUGCUGCAUUAAAAAGUUAAUAAAAGUGGAGCAUGCCACAAGUCGUGCCGCAAUUUGCGGCAGCUGCAGCUG---CGUUCCAGCAAAAGGAUAUGGAUAUGGAUAUGAAUAUAAGUAA ....(((((..................((((......)))).(((..((((((.....))))))))))))))((---(......)))......(((..((((........))))..))). ( -31.40) >DroYak_CAF1 65718 111 - 1 CAUUGCUGCAUUAAAAAGUUAAUAAAAGUGGAGCAUGCCACAAGUCGUGCCGCAAUUUGCGGCAGCUGCAGCUG---CGUUCCAGCAAAGCGAUAU------GGAUAUGAAUAUAAGUAA ....(((((..................((((......)))).(((..((((((.....))))))))))))))..---(((((((.(.....)...)------))).)))........... ( -30.50) >consensus CAUUGCUGCAUUAAAAAGUUAAUAAAAGUGGAGCAUGCCACAAGUCGUGCCGCAAUUUGCGGCAGCUGCAGCUG___CGUUCCAGCAAAAGGAUAU______GGAUAUGAAUAUAAGUAA ....(((((..................((((......)))).(((..((((((.....)))))))))))))).....((((((...................))).)))........... (-26.98 = -27.01 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:03 2006