Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,079,789 – 2,079,883 |
Length | 94 |
Max. P | 0.740831 |
Location | 2,079,789 – 2,079,883 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 91.49 |
Mean single sequence MFE | -37.95 |
Consensus MFE | -29.62 |
Energy contribution | -31.25 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.07 |
Mean z-score | -1.91 |
Structure conservation index | 0.78 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2079789 94 + 22224390 AAAGCAGAGCGAGGCCCAUGGCUCUGCCCAUAUCGUUGGUGGUGGACUGCGUCACGGAAGCGCAGAAGCCGCCAACUGGCGUCGGGGUAUUCGU ...(((((((.(......).)))))))((....(((..(((((((.((((((.......))))))...))))).))..)))...))........ ( -41.80) >DroSec_CAF1 3249 94 + 1 AAAGCAGAGCGAGGCCCAUGGCUCUGCCCAUAUCGUUGGUGGUGGACUGCGUCACGGAAGCGAAGAAGCCGCCAACUGGCGUUGGGGUUUUCGU ...(((((((.(......).)))))))(((...(((..(((((((.((...((.(....).))...))))))).))..))).)))......... ( -40.50) >DroSim_CAF1 5603 94 + 1 AAAGCAGAGCGAGGCCCAUGGCUCUGCCCAUAUCGUUGGUGGUGGACUGCGUCACGGAAGCGAAGAAGCCGCCAACUGGCGUCGGGGUUUUCGU ...(((((((.(......).)))))))((....(((..(((((((.((...((.(....).))...))))))).))..)))...))........ ( -39.50) >DroEre_CAF1 3344 85 + 1 AAAGCAAAGCGAAGCCCAUGGCUCUGCCCAUAUCGUUGG---UGGACUGCGUCACGGAAGCG------CCGCCAACUAACGUCGGGGUAUUCGU ........((((((((...)))..(((((....((((((---(((.(.((((.......)))------).))).)))))))...)))))))))) ( -30.00) >consensus AAAGCAGAGCGAGGCCCAUGGCUCUGCCCAUAUCGUUGGUGGUGGACUGCGUCACGGAAGCGAAGAAGCCGCCAACUGGCGUCGGGGUAUUCGU ...(((((((.(......).)))))))((....((((((((((((.((...((.(....).))...))))))).)))))))...))........ (-29.62 = -31.25 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:00 2006