Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,811,992 – 18,812,088 |
Length | 96 |
Max. P | 0.993590 |
Location | 18,811,992 – 18,812,088 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -21.91 |
Energy contribution | -24.10 |
Covariance contribution | 2.19 |
Combinations/Pair | 1.11 |
Mean z-score | -2.66 |
Structure conservation index | 0.75 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18811992 96 - 22224390 GCAGCUCCUUACUCA-CAUUAAAAAUGUCGCCCAGACAUUAGCAUUUUUAUAUGGCGAAU--AUGGAGCAUUGAGGAGAGGGAGCUGCAACGGCGACGA ((((((((((.(((.-..((((.((((((.....)))))).((...(((((((.....))--))))))).)))).)))))))))))))..((....)). ( -36.10) >DroPse_CAF1 64807 81 - 1 GUAGCUCCUUCUGAACCAUUAAAAAUGUCUCUCAGACAUUAGCAUUUUUAUAUAGA---CAG--AGA--------GAGAGGGAG--GCACCGAGGA--- ....((((((((...........((((((.....))))))....(((((.......---.))--)))--------.))))))))--..........--- ( -16.90) >DroSec_CAF1 49485 98 - 1 GCAGCUCCUUACUCA-CAUUAAAAAUGUCGCCCAGACAUUAGCAUUUUUAUAUGGCGAAUAUAUGGAGCAUUGAGGAGAGGGAACUGCAACGUCGACGA ((((.(((((.(((.-..((((.((((((.....)))))).((.((..(((((.....)))))..)))).)))).)))))))).))))..((....)). ( -28.60) >DroSim_CAF1 33946 98 - 1 GCAGCUCCUUACUCA-CAUUAAAAAUGUCGCCCAGACAUUAGCAUUUUUAUAUGGCGAAUAUAUGGAGCAUUGAGGAGAGGGAGCUGCAACGUCGACGA ((((((((((.(((.-..((((.((((((.....)))))).((.((..(((((.....)))))..)))).)))).)))))))))))))..((....)). ( -35.20) >consensus GCAGCUCCUUACUCA_CAUUAAAAAUGUCGCCCAGACAUUAGCAUUUUUAUAUGGCGAAUAUAUGGAGCAUUGAGGAGAGGGAGCUGCAACGUCGACGA ((((((((((.(((.........((((((.....))))))......((((((((.....))))))))........)))))))))))))........... (-21.91 = -24.10 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:27 2006