Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,811,608 – 18,811,707 |
Length | 99 |
Max. P | 0.976061 |
Location | 18,811,608 – 18,811,707 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.20 |
Mean single sequence MFE | -27.06 |
Consensus MFE | -19.32 |
Energy contribution | -19.56 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.24 |
Mean z-score | -2.87 |
Structure conservation index | 0.71 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18811608 99 - 22224390 -------------------AGGUUG--UCCUGUCAAGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAACAACAACAA -------------------..((((--((((((((((((((.(....(....)...).)))...................(....)...........)))))))))))))))........ ( -28.30) >DroPse_CAF1 64248 120 - 1 CGGGAGGGGGGGGGUUCUUUGGCUGCCUCCUGUCAAGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAACAACAACAA ((..(((((((.(((......))).)))))((((........)))).))..))..(((((((.....((.((....))..(....)..)).....)).)))))................. ( -26.00) >DroSec_CAF1 49083 99 - 1 -------------------AGGCUG--UCCUGUCAAGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUUUUGGCAGGACAGCAACAACAA -------------------..((((--((((((((((((((.(....(....)...).)))...................(....)...........)))))))))))))))........ ( -28.10) >DroSim_CAF1 33031 99 - 1 -------------------AGGUUG--UCGGGGGGGGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAACAACAACAC -------------------.(((((--((..(((....))).)))))))......(((((((.....((.((....))..(....)..)).....)).)))))................. ( -23.50) >DroEre_CAF1 47164 93 - 1 -------------------AGGUUG--UCCUGUCAAGACCUAGACAGCUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAGCAA------ -------------------..((((--((((((((((((((.(....(....)...).)))...................(....)...........)))))))))))))))..------ ( -29.40) >consensus ___________________AGGUUG__UCCUGUCAAGACCUAGACAACUAACGAACCAAGGAAAUAACAACUAAAAAGACGGUGACUAUGGCAAAUCUCUUGGCAGGACAACAACAACAA .....................((((..((((((((((((((.(....(....)...).)))...................(....)...........)))))))))))))))........ (-19.32 = -19.56 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:26 2006