Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,776,992 – 18,777,128 |
Length | 136 |
Max. P | 0.848369 |
Location | 18,776,992 – 18,777,112 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -35.60 |
Consensus MFE | -32.06 |
Energy contribution | -32.30 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.17 |
Mean z-score | -1.82 |
Structure conservation index | 0.90 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18776992 120 + 22224390 GUGGGUUAAGACCACGUUCGAGUCAAGCGAAAAACAGUUAAAUCCUCGCAGGCAAUGGCCCAAAUGAAUUACCACUGGCGCGGUAAUCCCCGCCACAGUUCCAAAGUUAAGACUUCGACU ((((.......))))(((.(((((..((((...............)))).(((....))).....(((((.....(((((.((....)).))))).))))).........))))).))). ( -31.76) >DroSec_CAF1 23536 120 + 1 GUGGGUUAAGACCACGUUCGAGUCAAGCGAAAAACAGUUAAAUCCGCGCAGGCAAUGGCCCAAAUGAAUUACCACUGGCGCGGUAAUCCCCGCCACAGUUGCCAAGUUAAGACUCGGGCU ((((.......))))(((((((((..(((...............)))...((((((((.............))..(((((.((....)).)))))..)))))).......))))))))). ( -41.08) >DroEre_CAF1 22120 120 + 1 GUGUGUUAAGACCACGUUCGAGUCAAGCGAAAAACAGUUAAAUCCGCGCAGGUAAUGGCCCAAAUGAAUUACCACUGGCGCGGUAAUCUCCGCCACAGUUCCAAAGUUAAGACUCGAACU (((.((....)))))(((((((((..(((...............)))((.((((((...........))))))((((..((((......))))..))))......))...))))))))). ( -36.66) >DroYak_CAF1 21905 120 + 1 GUGGGUUAAGACCACGUUCGAGUCAAGCGAAAAACAGUUAAAUCCGCGCAGGUAAUGGCCCAAAUGAAUUACCACUGGCGCGGUAAUCCCCGUCAUAGUUCCAAAGUUAAGACUCAAACU ((((.......))))(((.(((((.(((........)))....((((((.((((((...........))))))....))))))...........................))))).))). ( -32.90) >consensus GUGGGUUAAGACCACGUUCGAGUCAAGCGAAAAACAGUUAAAUCCGCGCAGGCAAUGGCCCAAAUGAAUUACCACUGGCGCGGUAAUCCCCGCCACAGUUCCAAAGUUAAGACUCGAACU ((((.......))))(((((((((..(((.................))).((((((...........))))))((((..((((......))))..))))...........))))))))). (-32.06 = -32.30 + 0.25)
Location | 18,777,032 – 18,777,128 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -28.23 |
Energy contribution | -28.35 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.55 |
Structure conservation index | 0.72 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18777032 96 - 22224390 AGGGCCUCGA------------------------AGUCCGAGUCGAAGUCUUAACUUUGGAACUGUGGCGGGGAUUACCGCGCCAGUGGUAAUUCAUUUGGGCCAUUGCCUGCGAGGAUU ....(((((.------------------------.(((((..(((((((....)))))))...)).)))..((((((((((....))))))))))....((((....)))).)))))... ( -34.20) >DroSec_CAF1 23576 120 - 1 AGGGCCUAGAGCCCAGGAAACCAGUCCGAGUUCGAGUUCGAGCCCGAGUCUUAACUUGGCAACUGUGGCGGGGAUUACCGCGCCAGUGGUAAUUCAUUUGGGCCAUUGCCUGCGCGGAUU ..(((((((((((..(....)(((((((((((.(((((((....)))).))))))))))..)))).)))..((((((((((....)))))))))).)))))))).((((....))))... ( -49.10) >DroEre_CAF1 22160 108 - 1 AGGGCCUAGAACCCAGGAAACCAGUC------------CGAGUUCGAGUCUUAACUUUGGAACUGUGGCGGAGAUUACCGCGCCAGUGGUAAUUCAUUUGGGCCAUUACCUGCGCGGAUU ..((((((((..((.(....)..(((------------..(((((.((........)).)))))..))))).(((((((((....)))))))))..))))))))....((.....))... ( -35.40) >DroYak_CAF1 21945 108 - 1 AGGGCCUAGAACCCAGGAAACCAGUC------------UGAGUUUGAGUCUUAACUUUGGAACUAUGACGGGGAUUACCGCGCCAGUGGUAAUUCAUUUGGGCCAUUACCUGCGCGGAUU ..((((((((.(((.(....)..(((------------..(((((.((........)).)))))..))))))(((((((((....)))))))))..))))))))....((.....))... ( -38.20) >consensus AGGGCCUAGAACCCAGGAAACCAGUC____________CGAGUCCGAGUCUUAACUUUGGAACUGUGGCGGGGAUUACCGCGCCAGUGGUAAUUCAUUUGGGCCAUUACCUGCGCGGAUU ..((((((((...............................(((..(((((.......)).)))..)))..((((((((((....)))))))))).))))))))....((.....))... (-28.23 = -28.35 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:51 2006