Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,718,381 – 18,718,491 |
Length | 110 |
Max. P | 0.500000 |
Location | 18,718,381 – 18,718,491 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.86 |
Mean single sequence MFE | -36.40 |
Consensus MFE | -27.66 |
Energy contribution | -27.33 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.16 |
Mean z-score | -1.67 |
Structure conservation index | 0.76 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18718381 110 - 22224390 CAGGAGGCGUUAUUUGGCACA---------GCCAAUCGAUUGACUAGUGCAACAGUGUGGGGCAAUGUGGCCAGAGUGUGCGCAAAUACGUAAACAAUCGAUU-GGCGGUCUGCAAAUAC ..(.(((((((....)))...---------(((((((((((((((...((.(((.((.....)).))).))...))).((((......))))..)))))))))-))).)))).)...... ( -36.00) >DroSec_CAF1 19638 110 - 1 CAGGAGGCGUUAUUUGGCACA---------GCCAAUCGAUUGACUAGUGCAACAGUGUGGGGCAGUGUGGCCAAAGUGUGCGCAAAUACGUAAACAAUCGAUU-GGCGGCUUGCAAAUAC ..(.(((((((....)))...---------(((((((((((((((...((.(((.((.....)).))).))...))).((((......))))..)))))))))-))).)))).)...... ( -37.00) >DroYak_CAF1 19222 119 - 1 CAGGAGGCGUUAUUUGACACAUCCUAUCGAGCCUAUCGAUUGGCUAGUGCAACAGUGUGGCGUAGUGUGGCCAGAGUGUGCGCAAAUCCCAAAGUAAUCGAUUAGGCGGACUACAAAUA- .((((.(.(((....))).).)))).....(((((((((((((...(((((.((.(.((((........)))).).))))))).....))).....))))).)))))............- ( -36.20) >consensus CAGGAGGCGUUAUUUGGCACA_________GCCAAUCGAUUGACUAGUGCAACAGUGUGGGGCAGUGUGGCCAGAGUGUGCGCAAAUACGUAAACAAUCGAUU_GGCGGACUGCAAAUAC ..(.(((((((....)))............((((((((((((....(((((.((.(.(((..........))).).)))))))...(......)))))))))).))).)))).)...... (-27.66 = -27.33 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:38 2006