Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,710,892 – 18,710,992 |
Length | 100 |
Max. P | 0.544969 |
Location | 18,710,892 – 18,710,992 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 86.83 |
Mean single sequence MFE | -48.08 |
Consensus MFE | -37.85 |
Energy contribution | -40.73 |
Covariance contribution | 2.88 |
Combinations/Pair | 1.09 |
Mean z-score | -1.42 |
Structure conservation index | 0.79 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18710892 100 - 22224390 UGCUCCUGGCGGUGGUUGCGGCUGGAAGCCAGAGGGCGGUUGACCUGGAUGUCCUUGCUGCCCAGGGUGACCUGGUGGCGCCUGCCCGGCCAUCUGAACC .((.....))((((((((.(((.((..((((..(((((((.(((......)))...)))))))(((....)))..)))).)).)))))))))))...... ( -48.50) >DroSec_CAF1 12321 100 - 1 UGCUCCUGGCAGUGGUUGCGGCUGGAAGCCAGAGGGCGGUUGGCCCGGAUGUCCUUGCUGCCCAGGGUGACCUGGUGGCGCCUGACCGCCCAUCUGAACC .(((.(..((.((....)).))..).)))(((((((((((((((..((....))..((..((.(((....)))))..))))).)))))))).)))).... ( -53.90) >DroEre_CAF1 11540 94 - 1 UG------GCGGUGGUUGCUGCUGGAAGCCAGACGGCGGUUGGCCCGGAUGACCUUGCUGCCCGGGAUGACCUGGUGGCGCCUGACCUCCCAUCUGAACC ..------..(((((..((((((((...)))).))))(((((((..((....))..((..((.((.....)).))..))))).))))..)))))...... ( -38.00) >DroYak_CAF1 11781 97 - 1 UGCUCCAGGCGGUGGCUGCUGCUGGAAGCCAGAGGGCGGUUGGCCCGGAUGACCUUG---ACCGGGGUGACCCGGUGGCGCCUGACCACCCAUCUGCACC .(((((((.((((....)))))))).)))(((((((.(((((((((((....))...---((((((....)))))))).))).)))).))).)))).... ( -51.90) >consensus UGCUCCUGGCGGUGGUUGCGGCUGGAAGCCAGAGGGCGGUUGGCCCGGAUGACCUUGCUGCCCAGGGUGACCUGGUGGCGCCUGACCGCCCAUCUGAACC .(((.((((((((....)))))))).)))(((((((((((((((((((....)).......(((((....))))).)).))).)))))))).)))).... (-37.85 = -40.73 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:31 2006