Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,686,102 – 18,686,197 |
Length | 95 |
Max. P | 0.500000 |
Location | 18,686,102 – 18,686,197 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 88.07 |
Mean single sequence MFE | -39.75 |
Consensus MFE | -32.89 |
Energy contribution | -34.45 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.34 |
Structure conservation index | 0.83 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18686102 95 + 22224390 CCACUGCAGCCGGUGCAAUGGCGGCUGCAGGAGCUGCUUCGGUGAUCACGACAAUGGUGCCAACACCAGGAGCCUCCGGAUCAGGCGUGGCAGCC ...(((((((((.(.....).)))))))))..((((((.((.(((((.......(((((....)))))((.....)).)))))..)).)))))). ( -43.80) >DroSec_CAF1 18394 95 + 1 CCACUGCAGCCGGUGCAAUGGCGGCUGCAGGAGGUGCUUCGGUGAUCACGACAGUGGUGCCAACACCAGGAGCCUCCGGAUCAGGCGGAGCAGCC ...(((((((((.(.....).)))))))))..(.(((((((.(((((.......(((((....)))))((.....)).)))))..))))))).). ( -43.10) >DroEre_CAF1 7556 95 + 1 CCACUGGAGCCGGAGCUAUGGCGACUGCAGGAGCUGCUUCGGUGAUCACGGCAGUGAUGCCAACACCAGGAGUCUCCGGACCAAGUGGGGCAGCA (((((((..((((((((.((((((..((((...)))).)))........((((....))))....)))..)).)))))).)).)))))....... ( -39.90) >DroYak_CAF1 5506 95 + 1 UCACUGCACCCGGACCAAUGGCGACUGCAGGAGCUGCUUCGGUUAUCACGACCGUGAUGCCAACACCAGGAGCCUCCGGAUCAGGUGGGCCAGCA (((((....(((((.....(((..(((..((((...))))(((.(((((....)))))))).....)))..))))))))....)))))....... ( -32.20) >consensus CCACUGCAGCCGGAGCAAUGGCGACUGCAGGAGCUGCUUCGGUGAUCACGACAGUGAUGCCAACACCAGGAGCCUCCGGAUCAGGCGGGGCAGCA ...(((((((((.........)))))))))..(((((((((((.(((((....))))))))....((.((.....)))).......)))))))). (-32.89 = -34.45 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:23 2006