Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,681,997 – 18,682,091 |
Length | 94 |
Max. P | 0.796232 |
Location | 18,681,997 – 18,682,091 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 76.81 |
Mean single sequence MFE | -40.43 |
Consensus MFE | -23.30 |
Energy contribution | -25.38 |
Covariance contribution | 2.09 |
Combinations/Pair | 1.33 |
Mean z-score | -1.76 |
Structure conservation index | 0.58 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18681997 94 - 22224390 AUGGAGUUCUCCCGGCAGCAGGUCGGAGCAACUGUUCUAUGCUGCCUUUUGGGCAGGUGGCCUGACCCUAGGCUACCACUGGCUGACCGACAAG ..(((....)))(((((((.(((.(((((....)))))....((((.....))))(((((((((....)))))))))))).)))).)))..... ( -39.40) >DroSec_CAF1 14335 94 - 1 AUGGAGUUCUCCGGGCAGCAGGUCGGAGCAACUGCUCUAUGCUGCCUUUUGGGCAGGUGGCCUGACCCUGGGCUACCACUGGCUGACCGACAAG .(((.((((...((((((((....(((((....))))).))))))))...)))).((((((((......)))))))).........)))..... ( -42.40) >DroEre_CAF1 3583 94 - 1 AUGGAGUACCCCCGGUAGCAGGUCGGAGCAACUGCUCUAUGCUGCCAUCUGGGCAGGUGGCCUGUCCCUGGGCUAUCACUGGCUGACCGACAAG .(((.......((((..((((((((((((....)))))...(((((.....)))))..)))))))..))))((((....))))...)))..... ( -38.70) >DroYak_CAF1 1558 94 - 1 AUGGAGUUCACCGGGCAGCAGAUCGGAGCAACUGCUCUAUGCUGCCUUUUGGGCAGGUGGCCUGACCCUGGGCUACCACUGGCUGACCGACAGG .(((.(((((..((((((((....(((((....))))).))))))))..))))).((((((((......)))))))).........)))..... ( -44.00) >DroAna_CAF1 3540 94 - 1 AUGGAGCCACCCUGACAGUCGGCUGGAGCAGCUCCUGUACGCCACCUACUGGGCCGGAGGUCUGGCUCUGGCCUACCAUUGGCUGGGCCCCAAG .(((.(((......((((..(((((...))))).))))..((((.....((((((((((......))))))))))....))))..))).))).. ( -40.90) >DroPer_CAF1 1582 94 - 1 AUGGAGUUCGCCCGGGAGCAAAGCUGAGAUGUUCCUGUACGGCGCAUUCUGGGCCGGCGGCCUGGGACUAGGCUACUUUUGGCUGACUCAGCGA ...(((((.(((((((((((.........))))))))..((((.(.....).))))(..(((((....)))))..)....))).)))))..... ( -37.20) >consensus AUGGAGUUCCCCCGGCAGCAGGUCGGAGCAACUGCUCUAUGCUGCCUUCUGGGCAGGUGGCCUGACCCUGGGCUACCACUGGCUGACCGACAAG ..((.((((....(((((((....(((((....))))).)))))))....)))).(((((((((....))))))))).........))...... (-23.30 = -25.38 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:21 2006