Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,668,205 – 18,668,297 |
Length | 92 |
Max. P | 0.717435 |
Location | 18,668,205 – 18,668,297 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.43 |
Mean single sequence MFE | -31.46 |
Consensus MFE | -18.68 |
Energy contribution | -18.44 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.15 |
Mean z-score | -1.94 |
Structure conservation index | 0.59 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18668205 92 - 22224390 GGAAUCGCGAUCCCCACUUGGGCGGUCCUUAAUUACGCGAAGGGAGUGCC-UCCCGCCAGGCAAUUGCUCC---------------------------CCGCACAAGAAUUCCAAUACAA ((((((..(((((((....))).)))).........(((..(((((((((-(......))))....)))))---------------------------))))....).)))))....... ( -32.00) >DroSec_CAF1 13271 92 - 1 GGGAACGCGAUCCCCAAUUGGGCGGUCCACAAUUAUGCGAAGGGUGUGCC-UCCGUCCAGGCAAUUGCUCC---------------------------CCGCACAUGAAUUCCAAAACAA .((((..((((((((....))).))))........((((..((((.((((-(......)))))...)))).---------------------------.))))...)..))))....... ( -29.50) >DroSim_CAF1 11365 92 - 1 GGGAACGCGAUCCCCACUUGGGCGGUCCUCAAUUAUGCGAAGGGUGUGCC-UCCGUCCAGGCAAUUGCUCC---------------------------CCGCACAUGAAUUCCAAAACAA .((((..((((((((....))).))))........((((..((((.((((-(......)))))...)))).---------------------------.))))...)..))))....... ( -29.50) >DroEre_CAF1 13479 92 - 1 GGGACCGCGAUCCCCACUUGGGCGGUCCCCAAUUACGCGAAGGGAGUUCC-GCCGACCAGGCAAUUGCUCC---------------------------CUGCACAAGAAUUUCAAAACAA ((((((((...((......)))))))))).......((..(((((((...-(((.....)))....)))))---------------------------)))).................. ( -35.00) >DroYak_CAF1 13513 120 - 1 GGGACCGCGAUCCCCACUUGGGUGGUCCCCAAUUAAGCGAAGGGAGUGCCCCCCGACCAGGCAAUUGCUCCACCACUCCCCCCCCCCCCUCCCUUCACCGGCACAAGAAUUCCAAAACAA (((((((.....(((....)))))))))).........((((((((((((.........))))..((......)).............))))))))........................ ( -31.30) >consensus GGGAACGCGAUCCCCACUUGGGCGGUCCCCAAUUACGCGAAGGGAGUGCC_UCCGACCAGGCAAUUGCUCC___________________________CCGCACAAGAAUUCCAAAACAA ((((....(((((((....))).)))).........(((..((..(.......)..)).(((....)))..............................))).......))))....... (-18.68 = -18.44 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:01 2006